QCShrinker

This application is used to remove the verbose table attachments from a qcml file.

The command line parameters of this tool are:

QCShrinker -- produces qcml files
Version: 1.10.0 Mar  7 2013, 08:30:22, Revision: unknown

Usage:
  QCShrinker <options>

Options (mandatory options marked with '*'):
  -in <file>*             Input qcml file (valid formats: 'qcML')
  -qp_accessions <names>  A list of cv accessions that should be removed. if empty, all tables will be remove
                          d!
  -name <string>          The name of the target run or set that contains the requested quality parameter.
  -run <file>             The file from which the name of the target run that contains the requested quality 
                          parameter is taken. This overrides the name parameter! (valid formats: 'mzML')
  -out <file>*            Output extended/reduced qcML file (valid formats: 'qcML')
                          
Common UTIL options:
  -ini <file>             Use the given TOPP INI file
  -threads <n>            Sets the number of threads allowed to be used by the TOPP tool (default: '1')
  -write_ini <file>       Writes the default configuration file
  --help                  Shows options
  --helphelp              Shows all options (including advanced)

INI file documentation of this tool:

Legend:

required parameter

advanced parameter

+QCShrinkerproduces qcml files

version1.10.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'QCShrinker'

in Input qcml fileinput file*.qcML

qp_accessions[] A list of cv accessions that should be removed. if empty, all tables will be removed!

name The name of the target run or set that contains the requested quality parameter.

run The file from which the name of the target run that contains the requested quality parameter is taken. This overrides the name parameter!input file*.mzML

out Output extended/reduced qcML fileoutput file*.qcML

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

testfalse Enables the test mode (needed for internal use only)true,false