AASequence Member List

This is the complete list of members for AASequence, including all inherited members.

AASequence()	AASequence
AASequence(const AASequence &rhs)	AASequence
AASequence(const String &rhs)	AASequence
AASequence(const char *rhs)	AASequence
begin()	AASequence	[inline]
begin() const	AASequence	[inline]
c_term_mod_	AASequence	[protected]
empty() const	AASequence
end()	AASequence	[inline]
end() const	AASequence	[inline]
getAAFrequencies(Map< String, Size > &frequency_table) const	AASequence
getAverageWeight(Residue::ResidueType type=Residue::Full, Int charge=0) const	AASequence
getCTerminalModification() const	AASequence
getFormula(Residue::ResidueType type=Residue::Full, Int charge=0) const	AASequence
getMonoWeight(Residue::ResidueType type=Residue::Full, Int charge=0) const	AASequence
getNTerminalModification() const	AASequence
getNumberOf(const String &residue) const	AASequence
getPrefix(Size index) const	AASequence
getResidue(SignedSize index) const	AASequence
getResidue(Size index) const	AASequence
getResidueDB_() const	AASequence	[protected]
getSubsequence(Size index, UInt number) const	AASequence
getSuffix(Size index) const	AASequence
has(const Residue &residue) const	AASequence
has(const String &name) const	AASequence
hasCTerminalModification() const	AASequence
hasNTerminalModification() const	AASequence
hasPrefix(const AASequence &peptide) const	AASequence
hasPrefix(const String &peptide) const	AASequence
hasSubsequence(const AASequence &peptide) const	AASequence
hasSubsequence(const String &peptide) const	AASequence
hasSuffix(const AASequence &peptide) const	AASequence
hasSuffix(const String &peptide) const	AASequence
isModified() const	AASequence
isModified(Size index) const	AASequence
isValid() const	AASequence
n_term_mod_	AASequence	[protected]
operator!=(const AASequence &rhs) const	AASequence
operator!=(const String &rhs) const	AASequence
operator!=(const char *rhs) const	AASequence
operator+(const AASequence &peptide) const	AASequence
operator+(const String &peptide) const	AASequence
operator+(const char *rhs) const	AASequence
operator+(const Residue *residue) const	AASequence
operator+=(const AASequence &)	AASequence
operator+=(const String &)	AASequence
operator+=(const char *rhs)	AASequence
operator+=(const Residue *residue)	AASequence
operator<(const AASequence &rhs) const	AASequence
operator<<(std::ostream &os, const AASequence &peptide)	AASequence	[friend]
operator=(const AASequence &rhs)	AASequence
operator==(const AASequence &rhs) const	AASequence
operator==(const String &rhs) const	AASequence
operator==(const char *rhs) const	AASequence
operator>>(std::istream &is, const AASequence &peptide)	AASequence	[friend]
operator[](SignedSize index) const	AASequence
operator[](Size index) const	AASequence
parseString_(std::vector< const Residue * > &sequence, const String &peptide)	AASequence	[protected]
peptide_	AASequence	[protected]
sequence_string_	AASequence	[protected]
setCTerminalModification(const String &modification)	AASequence
setModification(Size index, const String &modification)	AASequence
setNTerminalModification(const String &modification)	AASequence
setStringSequence(const String &sequence)	AASequence
size() const	AASequence
toString() const	AASequence
toUnmodifiedString() const	AASequence
valid_	AASequence	[protected]
~AASequence()	AASequence	[virtual]