, including all inherited members.
| addSingleChargedIons_(Map< DoubleReal, IonScore > &ion_scores, PeakSpectrum &CID_spec) | CompNovoIonScoringBase | [protected] |
| check_defaults_ | DefaultParamHandler | [protected] |
| CHILD enum value | CompNovoIonScoringBase | |
| classifyIsotopes_(const PeakSpectrum &spec, PeakSpectrum::ConstIterator it) | CompNovoIonScoringBase | [protected] |
| CompNovoIonScoring() | CompNovoIonScoring | |
| CompNovoIonScoring(const CompNovoIonScoring &source) | CompNovoIonScoring | |
| CompNovoIonScoringBase() | CompNovoIonScoringBase | |
| CompNovoIonScoringBase(const CompNovoIonScoringBase &source) | CompNovoIonScoringBase | |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | [protected] |
| defaultsToParam_() | DefaultParamHandler | [protected] |
| error_name_ | DefaultParamHandler | [protected] |
| fragment_mass_tolerance_ | CompNovoIonScoringBase | [protected] |
| getDefaults() const | DefaultParamHandler | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| initIsotopeDistributions_() | CompNovoIonScoringBase | [protected] |
| IonScore typedef | CompNovoIonScoring | |
| isotope_distributions_ | CompNovoIonScoringBase | [protected] |
| IsotopeType typedef | CompNovoIonScoring | |
| LONE enum value | CompNovoIonScoringBase | |
| operator=(const CompNovoIonScoring &source) | CompNovoIonScoring | |
| OpenMS::CompNovoIonScoringBase::operator=(const CompNovoIonScoringBase &source) | CompNovoIonScoringBase | |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
| param_ | DefaultParamHandler | [protected] |
| PARENT enum value | CompNovoIonScoringBase | |
| scoreETDFeatures_(Size charge, DoubleReal precursor_weight, Map< DoubleReal, IonScore > &CID_nodes, const PeakSpectrum &CID_orig_spec, const PeakSpectrum &ETD_orig_spec) | CompNovoIonScoring | [protected] |
| scoreIsotopes(const PeakSpectrum &CID_spec, PeakSpectrum::ConstIterator it, Size charge) | CompNovoIonScoringBase | |
| scoreIsotopes_(const PeakSpectrum &spec, PeakSpectrum::ConstIterator it, Map< DoubleReal, IonScore > &CID_nodes, Size charge=1) | CompNovoIonScoringBase | [protected] |
| scoreSpectra(Map< DoubleReal, IonScore > &CID_ion_scores, PeakSpectrum &CID_spec, PeakSpectrum &ETD_spec, DoubleReal precursor_weight, Size charge) | CompNovoIonScoring | |
| scoreWitnessSet_(Size charge, DoubleReal precursor_weight, Map< DoubleReal, IonScore > &CID_nodes, const PeakSpectrum &CID_orig_spec) | CompNovoIonScoring | [protected, virtual] |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| subsections_ | DefaultParamHandler | [protected] |
| updateMembers_() | CompNovoIonScoringBase | [protected, virtual] |
| warn_empty_defaults_ | DefaultParamHandler | [protected] |
| ~CompNovoIonScoring() | CompNovoIonScoring | [virtual] |
| ~CompNovoIonScoringBase() | CompNovoIonScoringBase | [virtual] |
| ~DefaultParamHandler() | DefaultParamHandler | [virtual] |