, including all inherited members.
| check_defaults_ | DefaultParamHandler | [protected] |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | [protected] |
| defaultsToParam_() | DefaultParamHandler | [protected] |
| dia_by_ion_score(SpectrumType spectrum, AASequence &sequence, int charge, double &bseries_score, double &yseries_score) | DIAScoring | |
| dia_byseries_intensity_min_ | DIAScoring | [private] |
| dia_byseries_ppm_diff_ | DIAScoring | [private] |
| dia_centroided_ | DIAScoring | [private] |
| dia_extract_window_ | DIAScoring | [private] |
| dia_isotope_scores(const std::vector< TransitionType > &transitions, SpectrumType spectrum, OpenSwath::IMRMFeature *mrmfeature, double &isotope_corr, double &isotope_overlap) | DIAScoring | |
| dia_massdiff_score(const std::vector< TransitionType > &transitions, SpectrumType spectrum, const std::vector< double > &normalized_library_intensity, double &ppm_score, double &ppm_score_weighted) | DIAScoring | |
| dia_nr_charges_ | DIAScoring | [private] |
| dia_nr_isotopes_ | DIAScoring | [private] |
| diaIsotopeScoresSub_(const std::vector< TransitionType > &transitions, SpectrumType spectrum, std::map< std::string, double > &intensities, double &isotope_corr, double &isotope_overlap) | DIAScoring | [private] |
| DIAScoring() | DIAScoring | |
| DIAScoring(const DIAScoring &rhs) | DIAScoring | [private] |
| error_name_ | DefaultParamHandler | [protected] |
| getDefaults() const | DefaultParamHandler | |
| getFirstIsotopeRelativeIntensities_(const std::vector< TransitionType > &transitions, OpenSwath::IMRMFeature *mrmfeature, std::map< std::string, double > &intensities) | DIAScoring | [private] |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| largePeaksBeforeFirstIsotope_(double product_mz, SpectrumType &spectrum, double max_ppm_diff, double main_peak) | DIAScoring | [private] |
| operator=(const DIAScoring &rhs) | DIAScoring | [private] |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
| param_ | DefaultParamHandler | [protected] |
| PeptideType typedef | DIAScoring | [private] |
| ProteinType typedef | DIAScoring | [private] |
| score_with_isotopes(SpectrumType spectrum, const std::vector< TransitionType > &transitions, double &dotprod, double &manhattan) | DIAScoring | |
| scoreIsotopePattern_(double product_mz, const std::vector< double > &isotopes_int, int putative_fragment_charge) | DIAScoring | [private] |
| set_dia_parameters(double dia_extract_window, double dia_centroided, double dia_byseries_intensity_min, double dia_byseries_ppm_diff, double dia_nr_isotopes, double dia_nr_charges) | DIAScoring | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| SpectrumType typedef | DIAScoring | [private] |
| subsections_ | DefaultParamHandler | [protected] |
| TransitionType typedef | DIAScoring | [private] |
| updateMembers_() | DIAScoring | [private, virtual] |
| warn_empty_defaults_ | DefaultParamHandler | [protected] |
| ~DefaultParamHandler() | DefaultParamHandler | [virtual] |
| ~DIAScoring() | DIAScoring | [inline, virtual] |