A map feature grouping algorithm for identified features. More...
#include <OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmIdentification.h>
Inheritance diagram for FeatureGroupingAlgorithmIdentification:
Public Member Functions | |
| FeatureGroupingAlgorithmIdentification () | |
| Default constructor. | |
| virtual | ~FeatureGroupingAlgorithmIdentification () |
| Destructor. | |
| virtual void | group (const std::vector< FeatureMap<> > &maps, ConsensusMap &out) |
| Applies the algorithm. | |
Static Public Member Functions | |
| static FeatureGroupingAlgorithm * | create () |
| Creates a new instance of this class (for Factory). | |
| static String | getProductName () |
| Returns the product name (for the Factory). | |
Private Member Functions | |
| FeatureGroupingAlgorithmIdentification (const FeatureGroupingAlgorithmIdentification &) | |
| Copy constructor intentionally not implemented -> private. | |
| FeatureGroupingAlgorithmIdentification & | operator= (const FeatureGroupingAlgorithmIdentification &) |
| Assignment operator intentionally not implemented -> private. | |
Detailed Description
A map feature grouping algorithm for identified features.
- Deprecated:
- Deprecated in OpenMS 1.7.
It takes many maps and searches for corresponding features. The corresponding features must be aligned, but may have small position deviations.
Parameters of this class are:| Name | Type | Default | Restrictions | Description |
|---|---|---|---|---|
| xcorr_threshold | float | 1.2 | Peptide identifications having a SEQUEST XCorr score smaller than this are discarded. | |
| rt_stdev_threshold | float | 100 | Maximum allowed standard deviation of retention times within a group | |
| mz_stdev_threshold | float | 1 | Maximum allowed standard deviation of mass-to-charge within a group |
Note:
- If a section name is documented, the documentation is displayed as tooltip.
- Advanced parameter names are italic.
Constructor & Destructor Documentation
Default constructor.
| virtual ~FeatureGroupingAlgorithmIdentification | ( | ) | [virtual] |
Destructor.
| FeatureGroupingAlgorithmIdentification | ( | const FeatureGroupingAlgorithmIdentification & | ) | [private] |
Copy constructor intentionally not implemented -> private.
Member Function Documentation
| static FeatureGroupingAlgorithm* create | ( | ) | [inline, static] |
Creates a new instance of this class (for Factory).
| virtual void group | ( | const std::vector< FeatureMap<> > & | maps, | |
| ConsensusMap & | out | |||
| ) | [virtual] |
Applies the algorithm.
- Exceptions:
-
IllegalArgument is thrown if less than two input maps are given.
Implements FeatureGroupingAlgorithm.
| FeatureGroupingAlgorithmIdentification& operator= | ( | const FeatureGroupingAlgorithmIdentification & | ) | [private] |
Assignment operator intentionally not implemented -> private.
| OpenMS / TOPP release 1.10.0 | Documentation generated on Thu Mar 7 2013 09:42:49 using doxygen 1.7.1 |