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FeatureXMLFile Member List

This is the complete list of members for FeatureXMLFile, including all inherited members.
accession_to_id_FeatureXMLFile [protected]
ActionMode enum nameXMLHandler [protected]
asBool_(const String &in)XMLHandler [inline, protected]
asDateTime_(String date_string)XMLHandler [inline, protected]
asDouble_(const String &in)XMLHandler [inline, protected]
asFloat_(const String &in)XMLHandler [inline, protected]
asInt_(const String &in)XMLHandler [inline, protected]
asInt_(const XMLCh *in)XMLHandler [inline, protected]
asUInt_(const String &in)XMLHandler [inline, protected]
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
attributeAsInt_(const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
attributeAsString_(const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
begin_ProgressLogger [mutable, protected]
characters(const XMLCh *const chars, const XMLSize_t length)FeatureXMLFile [protected, virtual]
OpenMS::Internal::XMLHandler::characters(const XMLCh *const chars, const XMLSize_t length)XMLHandler [protected, virtual]
CMD enum valueProgressLogger
current_chull_FeatureXMLFile [protected]
current_feature_FeatureXMLFile [protected]
cv_terms_XMLHandler [protected]
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)XMLHandler [inline, protected]
dim_FeatureXMLFile [protected]
disable_parsing_FeatureXMLFile [protected]
dlg_ProgressLogger [mutable, protected]
end_ProgressLogger [mutable, protected]
endElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname)FeatureXMLFile [protected, virtual]
OpenMS::Internal::XMLHandler::endElement(const XMLCh *const uri, const XMLCh *const localname, const XMLCh *const qname)XMLHandler [protected, virtual]
endProgress() const ProgressLogger
enforced_encoding_XMLFile [protected]
enforceEncoding_(const String &encoding)XMLFile [protected]
equal_(const XMLCh *a, const XMLCh *b)XMLHandler [inline, protected]
error(const xercesc::SAXParseException &exception)XMLHandler [protected]
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const XMLHandler [protected]
error_message_XMLHandler [mutable, protected]
errorString()XMLHandler [protected]
expected_size_FeatureXMLFile [protected]
fatalError(const xercesc::SAXParseException &exception)XMLHandler [protected]
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const XMLHandler [protected]
FeatureXMLFile()FeatureXMLFile
file_XMLHandler [protected]
getLogType() const ProgressLogger
getOptions()FeatureXMLFile
getOptions() const FeatureXMLFile
getVersion() const XMLFile
GUI enum valueProgressLogger
hull_position_FeatureXMLFile [protected]
id_identifier_FeatureXMLFile [protected]
identifier_id_FeatureXMLFile [protected]
in_description_FeatureXMLFile [protected]
isValid(const String &filename, std::ostream &os=std::cerr)XMLFile
last_invoke_ProgressLogger [mutable, protected]
last_meta_FeatureXMLFile [protected]
LOAD enum valueXMLHandler [protected]
load(const String &filename, FeatureMap<> &feature_map)FeatureXMLFile
loadSize(const String &filename)FeatureXMLFile
LogType enum nameProgressLogger
map_FeatureXMLFile [protected]
model_desc_FeatureXMLFile [protected]
NONE enum valueProgressLogger
open_tags_XMLHandler [protected]
optionalAttributeAsDouble_(DoubleReal &value, const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
optionalAttributeAsDouble_(DoubleReal &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const XMLHandler [inline, protected]
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandler [inline, protected]
options_FeatureXMLFile [protected]
param_FeatureXMLFile [protected]
parse_(const String &filename, XMLHandler *handler)XMLFile [protected]
pep_hit_FeatureXMLFile [protected]
pep_id_FeatureXMLFile [protected]
ProgressLogger()ProgressLogger
prot_hit_FeatureXMLFile [protected]
prot_id_FeatureXMLFile [protected]
proteinid_to_accession_FeatureXMLFile [protected]
recursion_depth_ProgressLogger [protected, static]
reset()XMLHandler [protected]
resetMembers_()FeatureXMLFile [protected]
save_(const String &filename, XMLHandler *handler) const XMLFile [protected]
schema_location_XMLFile [protected]
schema_version_XMLFile [protected]
search_param_FeatureXMLFile [protected]
setLogType(LogType type) const ProgressLogger
setProgress(SignedSize value) const ProgressLogger
size_only_FeatureXMLFile [protected]
sm_XMLHandler [protected]
startElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname, const xercesc::Attributes &attributes)FeatureXMLFile [protected, virtual]
OpenMS::Internal::XMLHandler::startElement(const XMLCh *const uri, const XMLCh *const localname, const XMLCh *const qname, const xercesc::Attributes &attrs)XMLHandler [protected, virtual]
startProgress(SignedSize begin, SignedSize end, const String &label) const ProgressLogger
stop_watch_ProgressLogger [mutable, protected]
STORE enum valueXMLHandler [protected]
store(const String &filename, const FeatureMap<> &feature_map)FeatureXMLFile
subordinate_feature_level_FeatureXMLFile [protected]
type_ProgressLogger [mutable, protected]
updateCurrentFeature_(bool create)FeatureXMLFile [protected]
value_ProgressLogger [mutable, protected]
version_XMLHandler [protected]
warning(const xercesc::SAXParseException &exception)XMLHandler [protected]
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const XMLHandler [protected]
writeFeature_(const String &filename, std::ostream &os, const Feature &feat, const String &identifier_prefix, UInt64 identifier, UInt indentation_level)FeatureXMLFile [protected]
writePeptideIdentification_(const String &filename, std::ostream &os, const PeptideIdentification &id, const String &tag_name, UInt indentation_level)FeatureXMLFile [protected]
writeTo(std::ostream &)XMLHandler [inline, protected, virtual]
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const XMLHandler [protected]
XMLFile()XMLFile
XMLFile(const String &schema_location, const String &version)XMLFile
XMLHandler(const String &filename, const String &version)XMLHandler [protected]
~FeatureXMLFile()FeatureXMLFile
~ProgressLogger()ProgressLogger
~XMLFile()XMLFile [virtual]
~XMLHandler()XMLHandler [protected, virtual]
OpenMS / TOPP release 1.10.0 Documentation generated on Thu Mar 7 2013 09:42:53 using doxygen 1.7.1