HMMState Class Reference

Hidden Markov Model State class for the Hidden Markov Model. More...

#include <OpenMS/ANALYSIS/ID/HiddenMarkovModel.h>

List of all members.

Public Member Functions
HMMState &	operator= (const HMMState &)
Constructors and destructors
	HMMState ()
	default constructor
	HMMState (const HMMState &state)
	copy constructor
	HMMState (const String &name, bool hidden=true)
	constructor with name and visibility option
virtual	~HMMState ()
	destructor
void	setName (const String &name)
	sets the name of the state
const String &	getName () const
	returns the name of the state
void	setHidden (bool hidden)
	sets the hidden property to the state
bool	isHidden () const
	returns true if the state is hidden
void	addPredecessorState (HMMState *state)
	adds the given predecessor state to the list
void	deletePredecessorState (HMMState *state)
	deletes the given predecessor state from the list
void	addSuccessorState (HMMState *state)
	add the given successor state to the list
void	deleteSuccessorState (HMMState *state)
	deletes the given successor state from the list
const std::set< HMMState * > &	getPredecessorStates () const
	returns the predecessor states of the state
const std::set< HMMState * > &	getSuccessorStates () const
	return the successor states of the state
Protected Attributes
bool	hidden_
String	name_
std::set< HMMState * >	pre_states_
std::set< HMMState * >	succ_states_

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Detailed Description

Hidden Markov Model State class for the Hidden Markov Model.

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Constructor & Destructor Documentation

HMMState

(

)

default constructor

HMMState

(

const HMMState &

state

)

copy constructor

HMMState	(	const String &	name,
		bool	hidden = true
	)

constructor with name and visibility option

virtual ~HMMState

(

)

[virtual]

destructor

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Member Function Documentation

void addPredecessorState

(

HMMState *

state

)

adds the given predecessor state to the list

void addSuccessorState

(

HMMState *

state

)

add the given successor state to the list

void deletePredecessorState

(

HMMState *

state

)

deletes the given predecessor state from the list

void deleteSuccessorState

(

HMMState *

state

)

deletes the given successor state from the list

const String& getName

(

)

const

returns the name of the state

const std::set<HMMState *>& getPredecessorStates

(

)

const

returns the predecessor states of the state

const std::set<HMMState *>& getSuccessorStates

(

)

const

return the successor states of the state

bool isHidden

(

)

const

returns true if the state is hidden

HMMState& operator=

(

const HMMState &

)

void setHidden

(

bool

hidden

)

sets the hidden property to the state

void setName

(

const String &

name

)

sets the name of the state

Accessors

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Member Data Documentation

bool hidden_ [protected]

String name_ [protected]

std::set<HMMState *> pre_states_ [protected]

std::set<HMMState *> succ_states_ [protected]