, including all inherited members.
| filterIdentificationsByBestHits(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, bool strict=false) | IDFilter | |
| filterIdentificationsByBestNHits(const IdentificationType &identification, Size n, IdentificationType &filtered_identification) | IDFilter | [inline] |
| filterIdentificationsByBestNHits(MSExperiment< PeakT > &experiment, Size n) | IDFilter | [inline] |
| filterIdentificationsByBestNToMHits(const IdentificationType &identification, Size n, Size m, IdentificationType &filtered_identification) | IDFilter | [inline] |
| filterIdentificationsByCharge(const PeptideIdentification &identification, Int charge, PeptideIdentification &filtered_identification) | IDFilter | |
| filterIdentificationsByExclusionPeptides(const PeptideIdentification &identification, const std::set< String > &peptides, PeptideIdentification &filtered_identification) | IDFilter | |
| filterIdentificationsByLength(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, Size min_length, Size max_length=UINT_MAX) | IDFilter | |
| filterIdentificationsByMzError(const PeptideIdentification &identification, DoubleReal mass_error, bool unit_ppm, PeptideIdentification &filtered_identification) | IDFilter | |
| filterIdentificationsByProteins(const PeptideIdentification &identification, const std::vector< FASTAFile::FASTAEntry > &proteins, PeptideIdentification &filtered_identification, bool no_protein_identifiers=false) | IDFilter | |
| filterIdentificationsByProteins(const ProteinIdentification &identification, const std::vector< FASTAFile::FASTAEntry > &proteins, ProteinIdentification &filtered_identification) | IDFilter | |
| filterIdentificationsByProteins(MSExperiment< PeakT > &experiment, const std::vector< FASTAFile::FASTAEntry > &proteins) | IDFilter | [inline] |
| filterIdentificationsByRTFirstDimPValues(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, DoubleReal p_value=0.05) | IDFilter | |
| filterIdentificationsByRTPValues(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, DoubleReal p_value=0.05) | IDFilter | |
| filterIdentificationsByScore(const IdentificationType &identification, DoubleReal threshold_score, IdentificationType &filtered_identification) | IDFilter | [inline] |
| filterIdentificationsByScores(MSExperiment< PeakT > &experiment, DoubleReal peptide_threshold_score, DoubleReal protein_threshold_score) | IDFilter | [inline] |
| filterIdentificationsByThreshold(const IdentificationType &identification, DoubleReal threshold_fraction, IdentificationType &filtered_identification) | IDFilter | [inline] |
| filterIdentificationsByThresholds(MSExperiment< PeakT > &experiment, DoubleReal peptide_threshold_fraction, DoubleReal protein_threshold_fraction) | IDFilter | [inline] |
| filterIdentificationsByVariableModifications(const PeptideIdentification &identification, const std::vector< String > &fixed_modifications, PeptideIdentification &filtered_identification) | IDFilter | |
| filterIdentificationsUnique(const PeptideIdentification &identification, PeptideIdentification &filtered_identification) | IDFilter | |
| IDFilter() | IDFilter | |
| removeUnreferencedProteinHits(const ProteinIdentification &identification, const std::vector< PeptideIdentification > peptide_identifications, ProteinIdentification &filtered_identification) | IDFilter | |
| ~IDFilter() | IDFilter | [virtual] |