InclusionExclusionList Member List

This is the complete list of members for InclusionExclusionList, including all inherited members.

check_defaults_	DefaultParamHandler	[protected]
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
defaults_	DefaultParamHandler	[protected]
defaultsToParam_()	DefaultParamHandler	[protected]
error_name_	DefaultParamHandler	[protected]
getDefaults() const	DefaultParamHandler
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
InclusionExclusionList()	InclusionExclusionList
mergeOverlappingWindows_(WindowList &list) const	InclusionExclusionList	[protected]
operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	[virtual]
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	[virtual]
param_	DefaultParamHandler	[protected]
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
subsections_	DefaultParamHandler	[protected]
updateMembers_()	DefaultParamHandler	[protected, virtual]
warn_empty_defaults_	DefaultParamHandler	[protected]
WindowList typedef	InclusionExclusionList	[protected]
writeTargets(const std::vector< FASTAFile::FASTAEntry > &fasta_entries, const String &out_path, const IntList &charges, const String rt_model_path)	InclusionExclusionList
writeTargets(const FeatureMap<> &map, const String &out_path)	InclusionExclusionList
writeTargets(const std::vector< PeptideIdentification > &pep_ids, const String &out_path, const IntList &charges)	InclusionExclusionList
writeToFile_(const String &out_path, const WindowList &windows) const	InclusionExclusionList	[protected]
~DefaultParamHandler()	DefaultParamHandler	[virtual]