, including all inherited members.
| applyTransformation_(const FeatureMap<> &feature_map, FeatureMap<> &calibrated_feature_map) | InternalCalibration | [protected] |
| begin_ | ProgressLogger | [mutable, protected] |
| calibrateMapGlobally(const MSExperiment< InputPeakType > &exp, MSExperiment< InputPeakType > &calibrated_exp, std::vector< DoubleReal > &ref_masses, String trafo_file_name="") | InternalCalibration | |
| calibrateMapGlobally(const MSExperiment< InputPeakType > &exp, MSExperiment< InputPeakType > &calibrated_exp, std::vector< PeptideIdentification > &ref_ids, String trafo_file_name="") | InternalCalibration | |
| calibrateMapGlobally(const FeatureMap<> &feature_map, FeatureMap<> &calibrated_feature_map, String trafo_file_name="") | InternalCalibration | |
| calibrateMapGlobally(const FeatureMap<> &feature_map, FeatureMap<> &calibrated_feature_map, std::vector< PeptideIdentification > &ref_ids, String trafo_file_name="") | InternalCalibration | |
| calibrateMapList(std::vector< MSExperiment< InputPeakType > > &exp_list, std::vector< MSExperiment< InputPeakType > > &calibrated_exp_list, std::vector< DoubleReal > &ref_masses, std::vector< DoubleReal > &detected_background_masses) | InternalCalibration | |
| calibrateMapSpectrumwise(const MSExperiment< InputPeakType > &exp, MSExperiment< InputPeakType > &calibrated_exp, std::vector< DoubleReal > &ref_masses) | InternalCalibration | |
| check_defaults_ | DefaultParamHandler | [protected] |
| checkReferenceIds_(std::vector< PeptideIdentification > &pep_ids) | InternalCalibration | [protected] |
| checkReferenceIds_(const FeatureMap<> &feature_map) | InternalCalibration | [protected] |
| CMD enum value | ProgressLogger | |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | [protected] |
| defaultsToParam_() | DefaultParamHandler | [protected] |
| dlg_ | ProgressLogger | [mutable, protected] |
| end_ | ProgressLogger | [mutable, protected] |
| endProgress() const | ProgressLogger | |
| error_name_ | DefaultParamHandler | [protected] |
| getDefaults() const | DefaultParamHandler | |
| getLogType() const | ProgressLogger | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| GUI enum value | ProgressLogger | |
| InternalCalibration() | InternalCalibration | |
| last_invoke_ | ProgressLogger | [mutable, protected] |
| LogType enum name | ProgressLogger | |
| makeLinearRegression_(std::vector< DoubleReal > &observed_masses, std::vector< DoubleReal > &theoretical_masses) | InternalCalibration | [protected] |
| NONE enum value | ProgressLogger | |
| operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
| param_ | DefaultParamHandler | [protected] |
| ProgressLogger() | ProgressLogger | |
| recursion_depth_ | ProgressLogger | [protected, static] |
| setLogType(LogType type) const | ProgressLogger | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setProgress(SignedSize value) const | ProgressLogger | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| stop_watch_ | ProgressLogger | [mutable, protected] |
| subsections_ | DefaultParamHandler | [protected] |
| trafo_ | InternalCalibration | [protected] |
| type_ | ProgressLogger | [mutable, protected] |
| updateMembers_() | DefaultParamHandler | [protected, virtual] |
| value_ | ProgressLogger | [mutable, protected] |
| warn_empty_defaults_ | DefaultParamHandler | [protected] |
| ~DefaultParamHandler() | DefaultParamHandler | [virtual] |
| ~InternalCalibration() | InternalCalibration | [inline] |
| ~ProgressLogger() | ProgressLogger | |