, including all inherited members.
| ActionMode enum name | XMLHandler | |
| actual_peptide_hit_ | MascotXMLHandler | [private] |
| actual_protein_hit_ | MascotXMLHandler | [private] |
| actual_query_ | MascotXMLHandler | [private] |
| actual_title_ | MascotXMLHandler | [private] |
| asBool_(const String &in) | XMLHandler | [inline, protected] |
| asDateTime_(String date_string) | XMLHandler | [inline, protected] |
| asDouble_(const String &in) | XMLHandler | [inline, protected] |
| asFloat_(const String &in) | XMLHandler | [inline, protected] |
| asInt_(const String &in) | XMLHandler | [inline, protected] |
| asInt_(const XMLCh *in) | XMLHandler | [inline, protected] |
| asUInt_(const String &in) | XMLHandler | [inline, protected] |
| attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
| attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
| attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
| attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
| attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
| attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
| attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
| attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
| attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
| attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
| attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
| attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
| characters(const XMLCh *const chars, const XMLSize_t) | MascotXMLHandler | [virtual] |
| cv_terms_ | XMLHandler | [protected] |
| cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | [inline, protected] |
| date_ | MascotXMLHandler | [private] |
| date_time_string_ | MascotXMLHandler | [private] |
| endElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname) | MascotXMLHandler | [virtual] |
| equal_(const XMLCh *a, const XMLCh *b) | XMLHandler | [inline, protected] |
| error(const xercesc::SAXParseException &exception) | XMLHandler | |
| error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| error_message_ | XMLHandler | [mutable, protected] |
| errorString() | XMLHandler | |
| fatalError(const xercesc::SAXParseException &exception) | XMLHandler | |
| fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| file_ | XMLHandler | [protected] |
| id_data_ | MascotXMLHandler | [private] |
| identifier_ | MascotXMLHandler | [private] |
| LOAD enum value | XMLHandler | |
| major_version_ | MascotXMLHandler | [private] |
| MascotXMLHandler(ProteinIdentification &protein_identification, std::vector< PeptideIdentification > &identifications, const String &filename, std::map< String, std::vector< AASequence > > &peptides, const RTMapping &rt_mapping=RTMapping()) | MascotXMLHandler | |
| minor_version_ | MascotXMLHandler | [private] |
| modified_peptides_ | MascotXMLHandler | [private] |
| open_tags_ | XMLHandler | [protected] |
| optionalAttributeAsDouble_(DoubleReal &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
| optionalAttributeAsDouble_(DoubleReal &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
| optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
| optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
| optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
| optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
| optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
| optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
| optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
| optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
| optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
| optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
| optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | [inline, protected] |
| optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | [inline, protected] |
| peptide_identification_index_ | MascotXMLHandler | [private] |
| protein_identification_ | MascotXMLHandler | [private] |
| reset() | XMLHandler | |
| rt_mapping_ | MascotXMLHandler | [private] |
| RTMapping typedef | MascotXMLHandler | |
| search_parameters_ | MascotXMLHandler | [private] |
| sm_ | XMLHandler | [protected] |
| startElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname, const xercesc::Attributes &attributes) | MascotXMLHandler | [virtual] |
| STORE enum value | XMLHandler | |
| tag_ | MascotXMLHandler | [private] |
| tags_open_ | MascotXMLHandler | [private] |
| version_ | XMLHandler | [protected] |
| warning(const xercesc::SAXParseException &exception) | XMLHandler | |
| warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| warning_msg_ | MascotXMLHandler | [private] |
| writeTo(std::ostream &) | XMLHandler | [inline, virtual] |
| writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | [protected] |
| XMLHandler(const String &filename, const String &version) | XMLHandler | |
| ~MascotXMLHandler() | MascotXMLHandler | [virtual] |
| ~XMLHandler() | XMLHandler | [virtual] |