This is the complete list of members for
IonizationSimulation, including all inherited members.
| basic_residues_ | IonizationSimulation | [private] |
| begin_ | ProgressLogger | [mutable, protected] |
| check_defaults_ | DefaultParamHandler | [protected] |
| CMD enum value | ProgressLogger | |
| countIonizedResidues_(const AASequence &) const | IonizationSimulation | [private] |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | [protected] |
| defaultsToParam_() | DefaultParamHandler | [protected] |
| dlg_ | ProgressLogger | [mutable, protected] |
| end_ | ProgressLogger | [mutable, protected] |
| endProgress() const | ProgressLogger | |
| error_name_ | DefaultParamHandler | [protected] |
| ESI enum value | IonizationSimulation | |
| esi_adducts_ | IonizationSimulation | [private] |
| esi_impurity_probabilities_ | IonizationSimulation | [private] |
| esi_probability_ | IonizationSimulation | [private] |
| getDefaults() const | DefaultParamHandler | |
| getLogType() const | ProgressLogger | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| GUI enum value | ProgressLogger | |
| ionization_type_ | IonizationSimulation | [private] |
| IonizationSimulation(const SimRandomNumberGenerator &) | IonizationSimulation | |
| IonizationSimulation(const IonizationSimulation &source) | IonizationSimulation | |
| IonizationSimulation() | IonizationSimulation | [private] |
| IonizationType enum name | IonizationSimulation | |
| ionize(FeatureMapSim &features, ConsensusMap &charge_consensus, MSSimExperiment &experiment) | IonizationSimulation | |
| ionizeEsi_(FeatureMapSim &, ConsensusMap &charge_consensus) | IonizationSimulation | [private] |
| ionizeMaldi_(FeatureMapSim &, ConsensusMap &charge_consensus) | IonizationSimulation | [private] |
| isFeatureValid_(const Feature &feature) | IonizationSimulation | [inline, private] |
| last_invoke_ | ProgressLogger | [mutable, protected] |
| LogType enum name | ProgressLogger | |
| MALDI enum value | IonizationSimulation | |
| maldi_probabilities_ | IonizationSimulation | [private] |
| max_adduct_charge_ | IonizationSimulation | [private] |
| maximal_mz_measurement_limit_ | IonizationSimulation | [private] |
| minimal_mz_measurement_limit_ | IonizationSimulation | [private] |
| NONE enum value | ProgressLogger | |
| operator=(const IonizationSimulation &source) | IonizationSimulation | |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
| param_ | DefaultParamHandler | [protected] |
| ProgressLogger() | ProgressLogger | |
| recursion_depth_ | ProgressLogger | [protected, static] |
| rnd_gen_ | IonizationSimulation | [protected] |
| setDefaultParams_() | IonizationSimulation | [private] |
| setFeatureProperties_(Feature &f, const DoubleReal &adduct_mass, const String &adduct_formula, const SimChargeType charge, const SimIntensityType new_intensity, const Size parent_index) | IonizationSimulation | [private] |
| setLogType(LogType type) const | ProgressLogger | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setProgress(SignedSize value) const | ProgressLogger | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| stop_watch_ | ProgressLogger | [mutable, protected] |
| subsections_ | DefaultParamHandler | [protected] |
| type_ | ProgressLogger | [mutable, protected] |
| updateMembers_() | IonizationSimulation | [private] |
| OpenMS::DefaultParamHandler::updateMembers_() | DefaultParamHandler | [protected, virtual] |
| value_ | ProgressLogger | [mutable, protected] |
| warn_empty_defaults_ | DefaultParamHandler | [protected] |
| ~DefaultParamHandler() | DefaultParamHandler | [virtual] |
| ~IonizationSimulation() | IonizationSimulation | [virtual] |
| ~ProgressLogger() | ProgressLogger | |