, including all inherited members.
| av_MZ_spacing_ | IsotopeWaveletTransform< PeakType > | [protected] |
| Box typedef | IsotopeWaveletTransform< PeakType > | |
| c_mzs_ | IsotopeWaveletTransform< PeakType > | [protected] |
| c_sorted_candidate_ | IsotopeWaveletTransform< PeakType > | [protected] |
| c_spacings_ | IsotopeWaveletTransform< PeakType > | [protected] |
| checkPositionForPlausibility_(const TransSpectrum &candidate, const MSSpectrum< PeakType > &ref, const DoubleReal seed_mz, const UInt c, const UInt scan_index, const bool check_PPMs, const DoubleReal transintens, const DoubleReal prev_score) | IsotopeWaveletTransform< PeakType > | [protected, virtual] |
| checkPositionForPlausibility_(const MSSpectrum< PeakType > &candidate, const MSSpectrum< PeakType > &ref, const DoubleReal seed_mz, const UInt c, const UInt scan_index, const bool check_PPMs, const DoubleReal transintens, const DoubleReal prev_score) | IsotopeWaveletTransform< PeakType > | [protected, virtual] |
| checkPPMTheoModel_(const MSSpectrum< PeakType > &ref, const DoubleReal c_mz, const UInt c) | IsotopeWaveletTransform< PeakType > | [protected, virtual] |
| closed_boxes_ | IsotopeWaveletTransform< PeakType > | [protected] |
| clusterSeeds_(const TransSpectrum &candidates, const MSSpectrum< PeakType > &ref, const UInt scan_index, const UInt c, const bool check_PPMs) | IsotopeWaveletTransform< PeakType > | [protected] |
| clusterSeeds_(const MSSpectrum< PeakType > &candidates, const MSSpectrum< PeakType > &ref, const UInt scan_index, const UInt c, const bool check_PPMs) | IsotopeWaveletTransform< PeakType > | [protected, virtual] |
| computeMinSpacing(const MSSpectrum< PeakType > &c_ref) | IsotopeWaveletTransform< PeakType > | [virtual] |
| data_length_ | IsotopeWaveletTransform< PeakType > | [protected] |
| end_boxes_ | IsotopeWaveletTransform< PeakType > | [protected] |
| extendBox_(const MSExperiment< PeakType > &map, const Box box) | IsotopeWaveletTransform< PeakType > | [protected] |
| from_max_to_left_ | IsotopeWaveletTransform< PeakType > | [protected] |
| from_max_to_right_ | IsotopeWaveletTransform< PeakType > | [protected] |
| front_boxes_ | IsotopeWaveletTransform< PeakType > | [protected] |
| getAvIntens_(const TransSpectrum &scan) | IsotopeWaveletTransform< PeakType > | [inline, protected] |
| getAvIntens_(const MSSpectrum< PeakType > &scan) | IsotopeWaveletTransform< PeakType > | [inline, protected] |
| getAvMZSpacing_(const MSSpectrum< PeakType > &scan) | IsotopeWaveletTransform< PeakType > | [inline, protected] |
| getClosedBoxes() | IsotopeWaveletTransform< PeakType > | [inline, virtual] |
| getLinearInterpolation(const typename MSSpectrum< PeakType >::const_iterator &left_iter, const DoubleReal mz_pos, const typename MSSpectrum< PeakType >::const_iterator &right_iter) | IsotopeWaveletTransform< PeakType > | [inline] |
| getLinearInterpolation(const DoubleReal mz_a, const DoubleReal intens_a, const DoubleReal mz_pos, const DoubleReal mz_b, const DoubleReal intens_b) | IsotopeWaveletTransform< PeakType > | [inline] |
| getMaxScanSize() const | IsotopeWaveletTransform< PeakType > | [inline] |
| getMinSpacing() const | IsotopeWaveletTransform< PeakType > | [inline] |
| getPPMs_(const DoubleReal mass_a, const DoubleReal mass_b) const | IsotopeWaveletTransform< PeakType > | [inline, protected] |
| getSdIntens_(const TransSpectrum &scan, const DoubleReal mean) | IsotopeWaveletTransform< PeakType > | [inline, protected] |
| getSdIntens_(const MSSpectrum< PeakType > &scan, const DoubleReal mean) | IsotopeWaveletTransform< PeakType > | [inline, protected] |
| getSigma() const | IsotopeWaveletTransform< PeakType > | [inline] |
| getTransform(MSSpectrum< PeakType > &c_trans, const MSSpectrum< PeakType > &c_ref, const UInt c) | IsotopeWaveletTransform< PeakType > | [virtual] |
| getTransformHighRes(MSSpectrum< PeakType > &c_trans, const MSSpectrum< PeakType > &c_ref, const UInt c) | IsotopeWaveletTransform< PeakType > | [virtual] |
| hr_data_ | IsotopeWaveletTransform< PeakType > | [protected] |
| identifyCharge(const MSSpectrum< PeakType > &candidates, const MSSpectrum< PeakType > &ref, const UInt scan_index, const UInt c, const DoubleReal ampl_cutoff, const bool check_PPMs) | IsotopeWaveletTransform< PeakType > | [virtual] |
| indices_ | IsotopeWaveletTransform< PeakType > | [protected] |
| initializeScan(const MSSpectrum< PeakType > &c_ref, const UInt c=0) | IsotopeWaveletTransform< PeakType > | [virtual] |
| intenstype_ | IsotopeWaveletTransform< PeakType > | [protected] |
| interpol_xs_ | IsotopeWaveletTransform< PeakType > | [protected] |
| interpol_ys_ | IsotopeWaveletTransform< PeakType > | [protected] |
| IsotopeWaveletTransform(const DoubleReal min_mz, const DoubleReal max_mz, const UInt max_charge, const Size max_scan_size=0, const bool use_cuda=false, const bool hr_data=false, const String intenstype="ref") | IsotopeWaveletTransform< PeakType > | |
| IsotopeWaveletTransform() | IsotopeWaveletTransform< PeakType > | [protected] |
| mapSeeds2Features(const MSExperiment< PeakType > &map, const UInt RT_votes_cutoff) | IsotopeWaveletTransform< PeakType > | |
| max_charge_ | IsotopeWaveletTransform< PeakType > | [protected] |
| max_mz_cutoff_ | IsotopeWaveletTransform< PeakType > | [protected] |
| max_num_peaks_per_pattern_ | IsotopeWaveletTransform< PeakType > | [protected] |
| max_scan_size_ | IsotopeWaveletTransform< PeakType > | [protected] |
| mergeFeatures(IsotopeWaveletTransform< PeakType > *later_iwt, const UInt RT_interleave, const UInt RT_votes_cutoff) | IsotopeWaveletTransform< PeakType > | |
| min_spacing_ | IsotopeWaveletTransform< PeakType > | [protected] |
| open_boxes_ | IsotopeWaveletTransform< PeakType > | [protected] |
| peptideMassRule_(const DoubleReal c_mass) const | IsotopeWaveletTransform< PeakType > | [inline, protected] |
| prod_ | IsotopeWaveletTransform< PeakType > | [protected] |
| psi_ | IsotopeWaveletTransform< PeakType > | [protected] |
| push2Box_(const DoubleReal mz, const UInt scan, UInt c, const DoubleReal score, const DoubleReal intens, const DoubleReal rt, const UInt MZ_begin, const UInt MZ_end, const DoubleReal ref_intens) | IsotopeWaveletTransform< PeakType > | [protected, virtual] |
| push2TmpBox_(const DoubleReal mz, const UInt scan, UInt charge, const DoubleReal score, const DoubleReal intens, const DoubleReal rt, const UInt MZ_begin, const UInt MZ_end) | IsotopeWaveletTransform< PeakType > | [protected, virtual] |
| sampleTheCMarrWavelet_(const MSSpectrum< PeakType > &scan, const Int wavelet_length, const Int mz_index, const UInt charge) | IsotopeWaveletTransform< PeakType > | [inline, protected] |
| scores_ | IsotopeWaveletTransform< PeakType > | [protected] |
| scoreThis_(const TransSpectrum &candidate, const UInt peak_cutoff, const DoubleReal seed_mz, const UInt c, const DoubleReal ampl_cutoff) | IsotopeWaveletTransform< PeakType > | [protected, virtual] |
| scoreThis_(const MSSpectrum< PeakType > &candidate, const UInt peak_cutoff, const DoubleReal seed_mz, const UInt c, const DoubleReal ampl_cutoff) | IsotopeWaveletTransform< PeakType > | [protected, virtual] |
| setSigma(const DoubleReal sigma) | IsotopeWaveletTransform< PeakType > | [inline] |
| sigma_ | IsotopeWaveletTransform< PeakType > | [protected] |
| tmp_boxes_ | IsotopeWaveletTransform< PeakType > | [protected] |
| updateBoxStates(const MSExperiment< PeakType > &map, const Size scan_index, const UInt RT_interleave, const UInt RT_votes_cutoff, const Int front_bound=-1, const Int end_bound=-1) | IsotopeWaveletTransform< PeakType > | |
| xs_ | IsotopeWaveletTransform< PeakType > | [protected] |
| zeros_ | IsotopeWaveletTransform< PeakType > | [protected] |
| ~IsotopeWaveletTransform() | IsotopeWaveletTransform< PeakType > | [virtual] |