A multi-chromatogram MRM feature. More...
#include <OpenMS/KERNEL/MRMFeature.h>
Public Types | |
| typedef std::vector< Feature > | FeatureListType |
| Type definitions. | |
| typedef std::map< String, double > | PGScoresType |
| Peak group score type. | |
Public Member Functions | |
Constructors and Destructor | |
| MRMFeature () | |
| Default constructor. | |
| MRMFeature (const MRMFeature &rhs) | |
| Copy constructor. | |
| MRMFeature & | operator= (const MRMFeature &rhs) |
| Assignment operator. | |
| virtual | ~MRMFeature () |
| Destructor. | |
Accessors | |
| const PGScoresType & | getScores () const |
| get all peakgroup scores | |
| double | getScore (const String &score_name) |
| get a single peakgroup score | |
| Feature & | getFeature (String key) |
| get a specified feature | |
| void | setScores (const PGScoresType &scores) |
| set all peakgroup scores | |
| void | addScore (const String &score_name, double score) |
| set a single peakgroup score | |
| void | addFeature (Feature &feature, const String &key) |
| Adds an feature from a single chromatogram into the feature. | |
| const std::vector< Feature > & | getFeatures () const |
| void | getFeatureIDs (std::vector< String > &result) const |
Protected Attributes | |
| FeatureListType | features_ |
| PGScoresType | pg_scores_ |
| peak group scores | |
| std::map< String, int > | feature_map_ |
| map native ids to the features | |
Detailed Description
A multi-chromatogram MRM feature.
An MRM feature contains corresponding features in multiple chromatograms, it is thus a representation of a peak group. The individual features in each chromatogram are represented by OpenMS Features.
Member Typedef Documentation
| typedef std::vector<Feature> FeatureListType |
Type definitions.
Feature list type
| typedef std::map<String, double> PGScoresType |
Peak group score type.
Constructor & Destructor Documentation
| MRMFeature | ( | ) |
Default constructor.
| MRMFeature | ( | const MRMFeature & | rhs | ) |
Copy constructor.
| virtual ~MRMFeature | ( | ) | [virtual] |
Destructor.
Member Function Documentation
Adds an feature from a single chromatogram into the feature.
Referenced by MRMTransitionGroupPicker::createMRMFeature().
set a single peakgroup score
Referenced by MRMFeatureFinderScoring::calculateSwathScores_().
get a specified feature
Referenced by EmgScoring::calcElutionFitScore().
| void getFeatureIDs | ( | std::vector< String > & | result | ) | const |
| const std::vector<Feature>& getFeatures | ( | ) | const |
| const PGScoresType& getScores | ( | ) | const |
get all peakgroup scores
| MRMFeature& operator= | ( | const MRMFeature & | rhs | ) |
Assignment operator.
| void setScores | ( | const PGScoresType & | scores | ) |
set all peakgroup scores
Member Data Documentation
std::map<String, int> feature_map_ [protected] |
map native ids to the features
FeatureListType features_ [protected] |
PGScoresType pg_scores_ [protected] |
peak group scores
| OpenMS / TOPP release 1.10.0 | Documentation generated on Thu Mar 7 2013 09:42:55 using doxygen 1.7.1 |