MS2Info Class Reference

#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2Info.h>

List of all members.

Public Member Functions
	~MS2Info ()
	MS2Info ()
	MS2Info (int)
	MS2Info (std::string, std::string, float)
	MS2Info (std::string, std::string, int, float)
	MS2Info (std::string, std::string, float, int, int)
	MS2Info (const MS2Info &)
	MS2Info (const MS2Info *)
MS2Info &	operator= (const MS2Info &)
bool	operator== (const MS2Info &)
MS2Info &	operator<= (const MS2Info &)
MS2Info &	operator>= (const MS2Info &)
MS2Info &	operator< (const MS2Info &)
MS2Info &	operator> (const MS2Info &)
void	add_modification (int, double)
std::map< int, double >::iterator	get_Modification_list_start ()
std::map< int, double >::iterator	get_Modification_list_end ()
std::map< int, double >::iterator	find_Modification (int pos)
std::map< int, double > *	get_Modification_list ()
bool	check_MODIFICATION ()
void	set_THEO_MASS_from_SQ ()
double	get_THEO_MZ ()
void	set_FULL_SQ ()
void	set_SQ (std::string IN)
void	show_info ()
bool	get_PROTEO_TYPE ()
int	get_TRYPTIC_STATE ()
bool	compare_AC (std::string)
bool	search_AC_pattern (std::string)
std::string	get_SQ ()
std::string	get_MOD_SQ ()
std::string	get_TOTAL_SQ ()
std::string	get_AC ()
std::vector< std::string >	get_ALL_AC ()
std::vector< std::string > ::iterator	get_ALL_AC_START ()
std::vector< std::string > ::iterator	get_ALL_AC_END ()
bool	find_AC (std::string)
void	set_AC (std::string)
float	get_PEP_PROB ()
void	set_PEP_PROB (float IN)
double	get_MONO_MZ ()
void	set_MONO_MZ (double)
double	get_NEUTRAL_MR ()
void	set_NEUTRAL_MR (double)
int	get_CHRG ()
void	set_CHRG (int IN)
int	get_SCAN ()
int	get_SCAN_START ()
void	set_SCAN_START (int IN)
int	get_SCAN_END ()
void	set_SCAN_END (int IN)
int	get_ID ()
double	get_DELTA_CN ()
void	set_DELTA_CN (double IN)
double	get_XCORR ()
void	set_XCORR (double IN)
void	set_MS2_TYPE_TAG (std::string IN)
std::string	get_MS2_TYPE_TAG ()
double	getRetentionTime ()
void	setRetentionTime (double IN)
double	get_MONO_AA_MASS (int)
std::string	get_PREV_AA ()
void	set_PREV_AA (std::string IN)
Static Public Attributes
static const double	mono_mass [26]
static const char	AA [20]
Private Attributes
int	ID
std::string	SQ
std::string	FULL_SQ
std::string	PREV_AA
std::vector< std::string >	AC
std::string	MS2_TYPE_TAG
float	PEP_PROB
double	XCORR
double	DELTA_CN
double	MONO_MZ
double	THEO_MZ
double	NEUTRAL_MR
int	CHRG
int	SCAN_START
int	SCAN_END
double	TR
std::map< int, double >	MOD_LIST
Static Private Attributes
static const double	_MONO_H
static const double	_MONO_O

---

Constructor & Destructor Documentation

~MS2Info

(

)

MS2Info

(

)

MS2Info

(

int

)

MS2Info	(	std::string	,
		std::string	,
		float
	)

MS2Info	(	std::string	,
		std::string	,
		int	,
		float
	)

MS2Info	(	std::string	,
		std::string	,
		float	,
		int	,
		int
	)

MS2Info

(

const MS2Info &

)

MS2Info

(

const MS2Info *

)

---

Member Function Documentation

void add_modification	(	int	,
		double
	)

bool check_MODIFICATION

(

)

[inline]

bool compare_AC

(

std::string

)

bool find_AC

(

std::string

)

std::map<int, double>::iterator find_Modification

(

int

pos

)

[inline]

std::string get_AC

(

)

[inline]

std::vector<std::string> get_ALL_AC

(

)

[inline]

std::vector<std::string>::iterator get_ALL_AC_END

(

)

[inline]

std::vector<std::string>::iterator get_ALL_AC_START

(

)

[inline]

int get_CHRG

(

)

[inline]

double get_DELTA_CN

(

)

[inline]

int get_ID

(

)

[inline]

std::string get_MOD_SQ

(

)

[inline]

std::map<int, double>* get_Modification_list

(

)

[inline]

std::map<int, double>::iterator get_Modification_list_end

(

)

[inline]

std::map<int, double>::iterator get_Modification_list_start

(

)

[inline]

double get_MONO_AA_MASS

(

int

)

double get_MONO_MZ

(

)

[inline]

std::string get_MS2_TYPE_TAG

(

)

[inline]

double get_NEUTRAL_MR

(

)

[inline]

float get_PEP_PROB

(

)

[inline]

std::string get_PREV_AA

(

)

[inline]

bool get_PROTEO_TYPE

(

)

int get_SCAN

(

)

[inline]

int get_SCAN_END

(

)

[inline]

int get_SCAN_START

(

)

[inline]

std::string get_SQ

(

)

[inline]

double get_THEO_MZ

(

)

[inline]

std::string get_TOTAL_SQ

(

)

[inline]

int get_TRYPTIC_STATE

(

)

double get_XCORR

(

)

[inline]

double getRetentionTime

(

)

[inline]

MS2Info& operator<

(

const MS2Info &

)

MS2Info& operator<=

(

const MS2Info &

)

MS2Info& operator=

(

const MS2Info &

)

bool operator==

(

const MS2Info &

)

MS2Info& operator>

(

const MS2Info &

)

MS2Info& operator>=

(

const MS2Info &

)

bool search_AC_pattern

(

std::string

)

void set_AC

(

std::string

)

void set_CHRG

(

int

IN

)

[inline]

void set_DELTA_CN

(

double

IN

)

[inline]

void set_FULL_SQ

(

)

void set_MONO_MZ

(

double

)

void set_MS2_TYPE_TAG

(

std::string

IN

)

[inline]

void set_NEUTRAL_MR

(

double

)

void set_PEP_PROB

(

float

IN

)

[inline]

void set_PREV_AA

(

std::string

IN

)

[inline]

void set_SCAN_END

(

int

IN

)

[inline]

void set_SCAN_START

(

int

IN

)

[inline]

void set_SQ

(

std::string

IN

)

[inline]

void set_THEO_MASS_from_SQ

(

)

void set_XCORR

(

double

IN

)

[inline]

void setRetentionTime

(

double

IN

)

[inline]

void show_info

(

)

---

Member Data Documentation

const double _MONO_H [static, private]

const double _MONO_O [static, private]

const char AA[20] [static]

std::vector<std::string> AC [private]

int CHRG [private]

double DELTA_CN [private]

std::string FULL_SQ [private]

int ID [private]

std::map<int, double> MOD_LIST [private]

const double mono_mass[26] [static]

double MONO_MZ [private]

std::string MS2_TYPE_TAG [private]

double NEUTRAL_MR [private]

float PEP_PROB [private]

std::string PREV_AA [private]

int SCAN_END [private]

int SCAN_START [private]

std::string SQ [private]

double THEO_MZ [private]

double TR [private]

double XCORR [private]