Base class for all Caap evaluation algorithms. More...
#include <OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.h>
Inheritance diagram for MapAlignmentEvaluationAlgorithm:
Public Member Functions | |
| MapAlignmentEvaluationAlgorithm () | |
| Default constructor. | |
| virtual | ~MapAlignmentEvaluationAlgorithm () |
| Destructor. | |
| virtual void | evaluate (const ConsensusMap &conensus_map_in, const ConsensusMap &consensus_map_gt, const DoubleReal &rt_dev, const DoubleReal &mz_dev, const Peak2D::IntensityType &int_dev, const bool use_charge, DoubleReal &out)=0 |
| Applies the algorithm. The input consensus map is compared to the ground truth. | |
| bool | isSameHandle (const FeatureHandle &lhs, const FeatureHandle &rhs, const DoubleReal &rt_dev, const DoubleReal &mz_dev, const Peak2D::IntensityType &int_dev, const bool use_charge) |
| Decides if two features are the same, based on maximum allowed deviations for retention time, m/z and intensity. | |
Static Public Member Functions | |
| static void | registerChildren () |
| Register all derived classes in this method. | |
Protected Types | |
| typedef ConsensusFeature::HandleSetType::const_iterator | HandleIterator |
Private Member Functions | |
| MapAlignmentEvaluationAlgorithm (const MapAlignmentEvaluationAlgorithm &) | |
| Copy constructor is not implemented -> private. | |
| MapAlignmentEvaluationAlgorithm & | operator= (const MapAlignmentEvaluationAlgorithm &) |
| Assignment operator is not implemented -> private. | |
Detailed Description
Base class for all Caap evaluation algorithms.
These algorithms evaluates alignment results against a ground truth.
Member Typedef Documentation
typedef ConsensusFeature::HandleSetType::const_iterator HandleIterator [protected] |
Constructor & Destructor Documentation
Default constructor.
| virtual ~MapAlignmentEvaluationAlgorithm | ( | ) | [virtual] |
Destructor.
| MapAlignmentEvaluationAlgorithm | ( | const MapAlignmentEvaluationAlgorithm & | ) | [private] |
Copy constructor is not implemented -> private.
Member Function Documentation
| virtual void evaluate | ( | const ConsensusMap & | conensus_map_in, | |
| const ConsensusMap & | consensus_map_gt, | |||
| const DoubleReal & | rt_dev, | |||
| const DoubleReal & | mz_dev, | |||
| const Peak2D::IntensityType & | int_dev, | |||
| const bool | use_charge, | |||
| DoubleReal & | out | |||
| ) | [pure virtual] |
Applies the algorithm. The input consensus map is compared to the ground truth.
Implemented in MapAlignmentEvaluationAlgorithmPrecision, and MapAlignmentEvaluationAlgorithmRecall.
| bool isSameHandle | ( | const FeatureHandle & | lhs, | |
| const FeatureHandle & | rhs, | |||
| const DoubleReal & | rt_dev, | |||
| const DoubleReal & | mz_dev, | |||
| const Peak2D::IntensityType & | int_dev, | |||
| const bool | use_charge | |||
| ) |
Decides if two features are the same, based on maximum allowed deviations for retention time, m/z and intensity.
| MapAlignmentEvaluationAlgorithm& operator= | ( | const MapAlignmentEvaluationAlgorithm & | ) | [private] |
Assignment operator is not implemented -> private.
| static void registerChildren | ( | ) | [static] |
Register all derived classes in this method.
| OpenMS / TOPP release 1.10.0 | Documentation generated on Thu Mar 7 2013 09:42:49 using doxygen 1.7.1 |