A meta data visualization widget. More...

#include <OpenMS/VISUAL/MetaDataBrowser.h>

Inheritance diagram for MetaDataBrowser:

Public Slots
void	setStatus (std::string status)
	Set a list of error strings due to invalid date format.
Public Member Functions
	MetaDataBrowser (bool editable=FALSE, QWidget *parent=0, bool modal=FALSE)
	Constructor with flag for edit mode.
template<class PeakType >
void	add (MSExperiment< PeakType > &exp)
	Adds a peak map.
template<class PeakType >
void	add (MSSpectrum< PeakType > &spectrum)
	Adds a peak spectrum.
template<class FeatureType >
void	add (FeatureMap< FeatureType > &map)
	Adds a feature map.
void	add (Feature &feature)
	Adds a feature.
void	add (ConsensusFeature &feature)
	Adds a consensus feature.
void	add (ConsensusMap &map)
	Adds a consensus map.
template<class MetaDataType >
void	add (MetaDataType &meta_data_object)
	A generic function to add data.
bool	isEditable ()
	Check if mode is editable or not.
Protected Slots
void	showDetails_ ()
	Raises the corresponding viewer from the widget stack according to the item selected in the tree.
void	saveAll_ ()
	Saves all changes and close explorer.
Protected Member Functions
template<typename ContainerType >
void	visualizeAll_ (ContainerType &container, QTreeWidgetItem *parent)
	Visualizes all elements of a container.
void	connectVisualizer_ (BaseVisualizerGUI *ptr)
	Connects the Signals of all visualier classes with Slot setStatus().
void	filterHits_ (DoubleReal threshold, bool higher_better, int tree_item_id)
	Filters hits according to a score threshold. Takes the score orientation into account.
void	showAllHits_ (int tree_item_id)
	Shows hits.
Visualizer for the different classes

void	visualize_ (ExperimentalSettings &meta, QTreeWidgetItem *parent=0)
void	visualize_ (SpectrumSettings &meta, QTreeWidgetItem *parent=0)
void	visualize_ (MetaInfoInterface &meta, QTreeWidgetItem *parent=0)
void	visualize_ (Sample &meta, QTreeWidgetItem *parent=0)
void	visualize_ (HPLC &meta, QTreeWidgetItem *parent=0)
void	visualize_ (Digestion &meta, QTreeWidgetItem *parent=0)
void	visualize_ (Modification &meta, QTreeWidgetItem *parent=0)
void	visualize_ (Tagging &meta, QTreeWidgetItem *parent=0)
void	visualize_ (Gradient &meta, QTreeWidgetItem *parent=0)
void	visualize_ (Software &meta, QTreeWidgetItem *parent=0)
void	visualize_ (ScanWindow &meta, QTreeWidgetItem *parent=0)
void	visualize_ (SourceFile &meta, QTreeWidgetItem *parent=0)
void	visualize_ (ContactPerson &meta, QTreeWidgetItem *parent=0)
void	visualize_ (Instrument &meta, QTreeWidgetItem *parent=0)
void	visualize_ (IonSource &meta, QTreeWidgetItem *parent=0)
void	visualize_ (IonDetector &meta, QTreeWidgetItem *parent=0)
void	visualize_ (MassAnalyzer &meta, QTreeWidgetItem *parent=0)
void	visualize_ (DataProcessing &meta, QTreeWidgetItem *parent=0)
void	visualize_ (ProteinIdentification &meta, QTreeWidgetItem *parent=0)
void	visualize_ (ProteinHit &meta, QTreeWidgetItem *parent=0)
void	visualize_ (PeptideHit &meta, QTreeWidgetItem *parent=0)
void	visualize_ (Acquisition &meta, QTreeWidgetItem *parent=0)
void	visualize_ (AcquisitionInfo &meta, QTreeWidgetItem *parent=0)
void	visualize_ (MetaInfoDescription &meta, QTreeWidgetItem *parent=0)
void	visualize_ (Precursor &meta, QTreeWidgetItem *parent=0)
void	visualize_ (Product &meta, QTreeWidgetItem *parent=0)
void	visualize_ (InstrumentSettings &meta, QTreeWidgetItem *parent=0)
void	visualize_ (PeptideIdentification &meta, QTreeWidgetItem *parent=0)
void	visualize_ (DocumentIdentifier &meta, QTreeWidgetItem *parent=0)
Protected Attributes
std::string	status_list_
	A list of setting errors due to invalid formats.
bool	editable_
	Indicates the mode.
QStackedWidget *	ws_
	A widgetstack that keeps track of all widgets.
QPushButton *	saveallbutton_
	Save button.
QPushButton *	closebutton_
	Close Button.
QPushButton *	cancelbutton_
	Cancel Button.
QPushButton *	undobutton_
	Undo Button.
QTreeWidget *	treeview_
	The tree.
Friends
class	ProteinIdentificationVisualizer
	Defines friend classess that can use the functionality of the subclasses.
class	PeptideIdentificationVisualizer

Detailed Description

A meta data visualization widget.

It contains a tree view showing all objects of the meta data to be viewed in hierarchical order.

The meta info data of the tree items are shown in the right part of the viewer, when they are selected in the tree.

If the data has beed modified exec() returns true . Otherwise false is returned.

Improvement:: Add generic mechanism to add items to data vectors e.g. for Instrument - IonSource (Hiwi)

Constructor & Destructor Documentation

MetaDataBrowser	(	bool	editable = `FALSE`,
		QWidget *	parent = `0`,
		bool	modal = `FALSE`
	)

Constructor with flag for edit mode.

Member Function Documentation

void add ( MSExperiment< PeakType > & exp ) [inline]

Adds a peak map.

Referenced by TOPPViewBase::metadataDatabaseDialog(), and TOPPViewBase::metadataFileDialog().

void add ( MSSpectrum< PeakType > & spectrum ) [inline]

Adds a peak spectrum.

References MSSpectrum< PeakT >::getFloatDataArrays(), MSSpectrum< PeakT >::getIntegerDataArrays(), and MSSpectrum< PeakT >::getStringDataArrays().

void add ( Feature & feature )

Adds a feature.

void add ( ConsensusFeature & feature )

Adds a consensus feature.

void add ( FeatureMap< FeatureType > & map ) [inline]

Adds a feature map.

References FeatureMap< FeatureT >::getProteinIdentifications(), and FeatureMap< FeatureT >::getUnassignedPeptideIdentifications().

void add ( ConsensusMap & map )

Adds a consensus map.

void add ( MetaDataType & meta_data_object ) [inline]

A generic function to add data.

The meta data information of all classes that for which a visualize_ method exists can be visualized.

void connectVisualizer_ ( BaseVisualizerGUI * ptr ) [protected]

Connects the Signals of all visualier classes with Slot setStatus().

void filterHits_	(	DoubleReal	threshold,
		bool	higher_better,
		int	tree_item_id
	)			`[protected]`

Filters hits according to a score threshold. Takes the score orientation into account.

bool isEditable ( )

Check if mode is editable or not.

void saveAll_ ( ) [protected, slot]

Saves all changes and close explorer.

void setStatus ( std::string status ) [slot]

Set a list of error strings due to invalid date format.

void showAllHits_ ( int tree_item_id ) [protected]

Shows hits.

void showDetails_ ( ) [protected, slot]

Raises the corresponding viewer from the widget stack according to the item selected in the tree.

void visualize_	(	ProteinHit &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	ProteinIdentification &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	DataProcessing &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	MassAnalyzer &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	IonDetector &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	IonSource &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	Instrument &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	PeptideHit &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	SourceFile &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	InstrumentSettings &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	Software &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	Gradient &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	Tagging &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	Modification &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	Digestion &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	MetaInfoDescription &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	Sample &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	MetaInfoInterface &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	SpectrumSettings &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	ContactPerson &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	Precursor &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	AcquisitionInfo &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	Product &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	ScanWindow &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	DocumentIdentifier &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	ExperimentalSettings &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	Acquisition &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	HPLC &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualize_	(	PeptideIdentification &	meta,
		QTreeWidgetItem *	parent = `0`
	)			`[protected]`

void visualizeAll_	(	ContainerType &	container,
		QTreeWidgetItem *	parent
	)			`[inline, protected]`

Visualizes all elements of a container.

Friends And Related Function Documentation

friend class PeptideIdentificationVisualizer [friend]

friend class ProteinIdentificationVisualizer [friend]

Defines friend classess that can use the functionality of the subclasses.

Member Data Documentation

QPushButton* cancelbutton_ [protected]

Cancel Button.

QPushButton* closebutton_ [protected]

Close Button.

bool editable_ [protected]

Indicates the mode.

QPushButton* saveallbutton_ [protected]

Save button.

std::string status_list_ [protected]

A list of setting errors due to invalid formats.

QTreeWidget* treeview_ [protected]

The tree.

QPushButton* undobutton_ [protected]

Undo Button.

QStackedWidget* ws_ [protected]

A widgetstack that keeps track of all widgets.

OpenMS / TOPP release 1.10.0

Documentation generated on Thu Mar 7 2013 09:42:58 using doxygen 1.7.1

MetaDataBrowser Class Reference [Visual]

Public Slots

Public Member Functions

Protected Slots

Protected Member Functions

Protected Attributes

Friends

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

Member Data Documentation

MetaDataBrowser Class Reference
[Visual]