This is the complete list of members for
ModificationsDB, including all inherited members.
| findModificationIndex(const String &mod_name) const | ModificationsDB | |
| getAllSearchModifications(std::vector< String > &modifications) | ModificationsDB | |
| getInstance() | ModificationsDB | [inline, static] |
| getModification(Size index) const | ModificationsDB | |
| getModification(const String &residue_name, const String &mod_name, ResidueModification::Term_Specificity term_spec) const | ModificationsDB | |
| getModification(const String &modification) const | ModificationsDB | |
| getModificationsByDiffMonoMass(std::vector< String > &mods, DoubleReal mass, DoubleReal error=0.0) | ModificationsDB | |
| getModificationsByDiffMonoMass(std::vector< String > &mods, const String &residue, DoubleReal mass, DoubleReal error=0.0) | ModificationsDB | |
| getNumberOfModifications() const | ModificationsDB | |
| getTerminalModification(const String &name, ResidueModification::Term_Specificity term_spec) const | ModificationsDB | |
| getTerminalModificationsByDiffMonoMass(std::vector< String > &mods, DoubleReal mass, DoubleReal error, ResidueModification::Term_Specificity term_spec) | ModificationsDB | |
| modification_names_ | ModificationsDB | [protected] |
| ModificationsDB() | ModificationsDB | [private] |
| ModificationsDB(const ModificationsDB &residue_db) | ModificationsDB | [private] |
| mods_ | ModificationsDB | [protected] |
| operator=(const ModificationsDB &aa) | ModificationsDB | [private] |
| readFromOBOFile(const String &filename) | ModificationsDB | |
| readFromUnimodXMLFile(const String &filename) | ModificationsDB | |
| searchModifications(std::set< const ResidueModification * > &mods, const String &orgin, const String &mod_name, ResidueModification::Term_Specificity term_spec) const | ModificationsDB | |
| searchModifications(std::set< const ResidueModification * > &mods, const String &mod_name, ResidueModification::Term_Specificity term_spec) const | ModificationsDB | |
| searchTerminalModifications(std::set< const ResidueModification * > &mods, const String &name, ResidueModification::Term_Specificity term_spec) const | ModificationsDB | |
| ~ModificationsDB() | ModificationsDB | [private, virtual] |