, including all inherited members.
| createProteinToPeptideLinks(const std::map< String, std::vector< PeptideIdentification > > &map_run_to_pepids, MapAccPepType &map_run_accession_to_pephits) | MzTabFile | [protected, static] |
| extractNumberOfSubSamples_(const std::map< String, std::vector< ProteinIdentification > > &map_run_to_proids) | MzTabFile | [protected, static] |
| extractNumPeptides(const String &common_identifier, const String &protein_accession, const MapAccPepType &map_run_accesion_to_peptides) | MzTabFile | [protected, static] |
| extractNumPeptidesDistinct(String common_identifier, String protein_accession, const MapAccPepType &map_run_accesion_to_peptides) | MzTabFile | [protected, static] |
| extractNumPeptidesUnambiguous(String common_identifier, String protein_accession, const MapAccPepType &map_run_accesion_to_peptides) | MzTabFile | [protected, static] |
| extractPeptideModifications_(const PeptideHit &peptide_hit) | MzTabFile | [protected, static] |
| extractProteinAccession_(const PeptideHit &peptide_hit) | MzTabFile | [protected, static] |
| generateMzTabMetaDataSection_(const MzTabMetaData &map, StringList &sl) const | MzTabFile | [protected] |
| generateMzTabPeptideHeader_(Int n_subsamples, const std::vector< String > &optional_protein_columns) const | MzTabFile | [protected] |
| generateMzTabPeptideSection_(const MzTabPeptideSectionData &map, StringList &sl) const | MzTabFile | [protected] |
| generateMzTabPeptideSectionRow_(const MzTabPeptideSectionRow &row, const String &unit_id) const | MzTabFile | [protected] |
| generateMzTabProteinSection_(const MzTabProteinSectionData &map, StringList &sl) const | MzTabFile | [protected] |
| generateMzTabProteinSectionRow_(const MzTabProteinSectionRow &row, const String &unit_id) const | MzTabFile | [protected] |
| generateMzTabSmallMoleculeHeader_(Int n_subsamples, const std::vector< String > &optional_smallmolecule_columns) const | MzTabFile | [protected] |
| generateMzTabSmallMoleculeSection_(const MzTabSmallMoleculeSectionData &map, StringList &sl) const | MzTabFile | [protected] |
| generateMzTabSmallMoleculeSectionRow_(const MzTabSmallMoleculeSectionRow &row, const String &unit_id) const | MzTabFile | [protected] |
| generateProteinHeader_(Int n_subsamples, const std::vector< String > &optional_protein_columns, StringList &sl) const | MzTabFile | [protected] |
| keepFirstPSM_(std::vector< PeptideIdentification >::iterator begin, std::vector< PeptideIdentification >::iterator end) | MzTabFile | [protected, static] |
| MapAccPepType typedef | MzTabFile | |
| mapSearchEngineScoreToCvParam_(const String &openms_search_engine_name, DoubleReal score, String score_type) | MzTabFile | [protected, static] |
| mapSearchEngineToCvParam_(const String &openms_search_engine_name) | MzTabFile | [protected, static] |
| MzTabFile() | MzTabFile | |
| partitionIntoRuns(const std::vector< PeptideIdentification > &pep_ids, const std::vector< ProteinIdentification > &pro_ids, std::map< String, std::vector< PeptideIdentification > > &map_run_to_pepids, std::map< String, std::vector< ProteinIdentification > > &map_run_to_proids) | MzTabFile | [protected, static] |
| sortPSM_(std::vector< PeptideIdentification >::iterator begin, std::vector< PeptideIdentification >::iterator end) | MzTabFile | [protected, static] |
| store(const String &filename, const std::vector< ProteinIdentification > &protein_ids, const std::vector< PeptideIdentification > &peptide_ids, String in, String document_id) const | MzTabFile | |
| store(const String &filename, const MzTab &mz_tab) const | MzTabFile | |
| writePeptideHeader_(SVOutStream &output, std::map< String, Size > n_sub_samples) | MzTabFile | [protected, static] |
| writeProteinData_(SVOutStream &output, const ProteinIdentification &prot_id, Size run_count, String input_filename, bool has_coverage, const MapAccPepType &map_run_accesion_to_peptides, const std::map< String, Size > &map_run_to_num_sub) | MzTabFile | [protected, static] |
| writeProteinHeader_(SVOutStream &output, std::map< String, Size > n_sub_samples) | MzTabFile | [protected, static] |
| ~MzTabFile() | MzTabFile | |