, including all inherited members.
| calculateXICs_(const FeatureMap<> &features, const std::vector< std::vector< std::pair< Size, Size > > > &mass_ranges, const MSExperiment< InputPeakType > &experiment, const std::set< Int > &charges_set, std::vector< std::vector< std::pair< Size, DoubleReal > > > &xics) | OfflinePrecursorIonSelection | [private] |
| check_defaults_ | DefaultParamHandler | [protected] |
| checkMassRanges_(std::vector< std::vector< std::pair< Size, Size > > > &mass_ranges, const MSExperiment< InputPeakType > &experiment) | OfflinePrecursorIonSelection | [private] |
| createProteinSequenceBasedLPInclusionList(String include, String rt_model_file, String pt_model_file, FeatureMap<> &precursors) | OfflinePrecursorIonSelection | |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | [protected] |
| defaultsToParam_() | DefaultParamHandler | [protected] |
| error_name_ | DefaultParamHandler | [protected] |
| getDefaults() const | DefaultParamHandler | |
| getLPSolver() | OfflinePrecursorIonSelection | [inline] |
| getMassRanges(const FeatureMap<> &features, const MSExperiment< InputPeakType > &experiment, std::vector< std::vector< std::pair< Size, Size > > > &indices) | OfflinePrecursorIonSelection | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| IndexTriple typedef | OfflinePrecursorIonSelection | |
| makePrecursorSelectionForKnownLCMSMap(const FeatureMap<> &features, const MSExperiment< InputPeakType > &experiment, MSExperiment< InputPeakType > &ms2, std::set< Int > &charges_set, bool feature_based) | OfflinePrecursorIonSelection | |
| OfflinePrecursorIonSelection() | OfflinePrecursorIonSelection | |
| operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
| param_ | DefaultParamHandler | [protected] |
| setLPSolver(LPWrapper::SOLVER solver) | OfflinePrecursorIonSelection | [inline] |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| solver_ | OfflinePrecursorIonSelection | [private] |
| subsections_ | DefaultParamHandler | [protected] |
| updateExclusionList_(std::vector< std::pair< T, Size > > &exclusion_list) | OfflinePrecursorIonSelection | [private] |
| updateExclusionList_(std::map< std::pair< DoubleReal, DoubleReal >, Size, PairComparatorSecondElement< std::pair< DoubleReal, DoubleReal > > > &exclusion_list) | OfflinePrecursorIonSelection | [inline, private] |
| updateMembers_() | DefaultParamHandler | [protected, virtual] |
| warn_empty_defaults_ | DefaultParamHandler | [protected] |
| ~DefaultParamHandler() | DefaultParamHandler | [virtual] |
| ~OfflinePrecursorIonSelection() | OfflinePrecursorIonSelection | [virtual] |