OpenSwathDataAccessHelper Class Reference

Several helpers to convert OpenMS datastructures to structures that implement the OpenSWATH interfaces. More...

#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h>

List of all members.

Static Public Member Functions
static void	convertToOpenMSSpectrum (const OpenSwath::SpectrumPtr sptr, OpenMS::MSSpectrum<> &spectrum)
	Convert a SpectrumPtr to an OpenMS Spectrum.
static OpenSwath::SpectrumPtr	convertToSpectrumPtr (const OpenMS::MSSpectrum<> &spectrum)
	Convert an OpenMS Spectrum to an SpectrumPtr.
static void	convertToOpenMSChromatogram (OpenMS::MSChromatogram<> &chromatogram, const OpenSwath::ChromatogramPtr cptr)
	Convert a ChromatogramPtr to an OpenMS Chromatogram.
static void	convertTargetedExp (const OpenMS::TargetedExperiment &transition_exp_, OpenSwath::LightTargetedExperiment &transition_exp)
	convert from the OpenMS Targeted experiment to the light Targeted Experiment
static void	convertPeptideToAASequence (const OpenSwath::LightPeptide &peptide, AASequence &aa_sequence)
	convert from the LightPeptide to an OpenMS AASequence (with correct modifications)

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Detailed Description

Several helpers to convert OpenMS datastructures to structures that implement the OpenSWATH interfaces.

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Member Function Documentation

static void convertPeptideToAASequence	(	const OpenSwath::LightPeptide &	peptide,
		AASequence &	aa_sequence
	)			[static]

convert from the LightPeptide to an OpenMS AASequence (with correct modifications)

Referenced by MRMFeatureFinderScoring::calculateSwathScores_().

static void convertTargetedExp	(	const OpenMS::TargetedExperiment &	transition_exp_,
		OpenSwath::LightTargetedExperiment &	transition_exp
	)			[static]

convert from the OpenMS Targeted experiment to the light Targeted Experiment

static void convertToOpenMSChromatogram	(	OpenMS::MSChromatogram<> &	chromatogram,
		const OpenSwath::ChromatogramPtr	cptr
	)			[static]

Convert a ChromatogramPtr to an OpenMS Chromatogram.

static void convertToOpenMSSpectrum	(	const OpenSwath::SpectrumPtr	sptr,
		OpenMS::MSSpectrum<> &	spectrum
	)			[static]

Convert a SpectrumPtr to an OpenMS Spectrum.

static OpenSwath::SpectrumPtr convertToSpectrumPtr

(

const OpenMS::MSSpectrum<> &

spectrum

)

[static]

Convert an OpenMS Spectrum to an SpectrumPtr.