OpenSwathHelper Class Reference

A helper class that is used by several OpenSWATH tools. More...

#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h>

List of all members.

Static Public Member Functions
static void	selectSwathTransitions (const OpenMS::TargetedExperiment &targeted_exp, OpenMS::TargetedExperiment &transition_exp_used, double min_upper_edge_dist, double lower, double upper)
	Select transitions between lower and upper and write them into the new TargetedExperiment.
static void	checkSwathMap (const OpenMS::MSExperiment< Peak1D > &swath_map, double &lower, double &upper)
	Get the lower / upper offset for this SWATH map and do some sanity checks.
static void	selectSwathTransitions (const OpenSwath::LightTargetedExperiment &targeted_exp, OpenSwath::LightTargetedExperiment &transition_exp_used, double min_upper_edge_dist, double lower, double upper)
	Select transitions between lower and upper and write them into the new TargetedExperiment.
template<class TargetedExperimentT >
static bool	checkSwathMapAndSelectTransitions (const OpenMS::MSExperiment< Peak1D > &exp, const TargetedExperimentT &targeted_exp, TargetedExperimentT &transition_exp_used, double min_upper_edge_dist)

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Detailed Description

A helper class that is used by several OpenSWATH tools.

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Member Function Documentation

static void checkSwathMap	(	const OpenMS::MSExperiment< Peak1D > &	swath_map,
		double &	lower,
		double &	upper
	)			[static]

Get the lower / upper offset for this SWATH map and do some sanity checks.

Referenced by OpenSwathHelper::checkSwathMapAndSelectTransitions().

static bool checkSwathMapAndSelectTransitions	(	const OpenMS::MSExperiment< Peak1D > &	exp,
		const TargetedExperimentT &	targeted_exp,
		TargetedExperimentT &	transition_exp_used,
		double	min_upper_edge_dist
	)			[inline, static]

References OpenSwathHelper::checkSwathMap(), DocumentIdentifier::getLoadedFilePath(), and OpenSwathHelper::selectSwathTransitions().

static void selectSwathTransitions	(	const OpenSwath::LightTargetedExperiment &	targeted_exp,
		OpenSwath::LightTargetedExperiment &	transition_exp_used,
		double	min_upper_edge_dist,
		double	lower,
		double	upper
	)			[static]

Select transitions between lower and upper and write them into the new TargetedExperiment.

static void selectSwathTransitions	(	const OpenMS::TargetedExperiment &	targeted_exp,
		OpenMS::TargetedExperiment &	transition_exp_used,
		double	min_upper_edge_dist,
		double	lower,
		double	upper
	)			[static]

Select transitions between lower and upper and write them into the new TargetedExperiment.

Referenced by OpenSwathHelper::checkSwathMapAndSelectTransitions().