This is the complete list of members for
PILISIdentification, including all inherited members.
| aa_weight_ | PILISIdentification | [protected] |
| check_defaults_ | DefaultParamHandler | [protected] |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | [protected] |
| defaultsToParam_() | DefaultParamHandler | [protected] |
| error_name_ | DefaultParamHandler | [protected] |
| getDefaults() const | DefaultParamHandler | |
| getFinalIdentification_(PeptideIdentification &id, const RichPeakSpectrum &spec, const PeptideIdentification &pre_id) | PILISIdentification | [protected] |
| getIdentification(const std::map< String, UInt > &candidates, PeptideIdentification &id, const RichPeakSpectrum &spectrum) | PILISIdentification | |
| getIdentifications(const std::vector< std::map< String, UInt > > &candidates, std::vector< PeptideIdentification > &ids, const RichPeakMap &exp) | PILISIdentification | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getPILISModel_() | PILISIdentification | [protected] |
| getPreIdentification_(PeptideIdentification &id, const RichPeakSpectrum &spec, const std::map< String, UInt > &cand_peptides) | PILISIdentification | [protected] |
| getSpectrum_(RichPeakSpectrum &spec, const String &sequence, int charge) | PILISIdentification | [protected] |
| getSubsections() const | DefaultParamHandler | |
| hmm_model_ | PILISIdentification | [protected] |
| operator=(const PILISIdentification &source) | PILISIdentification | |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
| own_model_ | PILISIdentification | [protected] |
| own_sequence_db_ | PILISIdentification | [protected] |
| p_ | PILISIdentification | [protected] |
| param_ | DefaultParamHandler | [protected] |
| PILISIdentification() | PILISIdentification | |
| PILISIdentification(const PILISIdentification &source) | PILISIdentification | |
| pre_scorer_ | PILISIdentification | [protected] |
| scorer_ | PILISIdentification | [protected] |
| setModel(PILISModel *hmm_model) | PILISIdentification | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| sim_specs_ | PILISIdentification | [protected] |
| subsections_ | DefaultParamHandler | [protected] |
| updateMembers_() | PILISIdentification | [protected, virtual] |
| warn_empty_defaults_ | DefaultParamHandler | [protected] |
| ~DefaultParamHandler() | DefaultParamHandler | [virtual] |
| ~PILISIdentification() | PILISIdentification | [virtual] |