This is the complete list of members for
PILISNeutralLossModel, including all inherited members.
| check_defaults_ | DefaultParamHandler | [protected] |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | [protected] |
| defaultsToParam_() | DefaultParamHandler | [protected] |
| enableIonStates_(const AASequence &peptide) | PILISNeutralLossModel | [protected] |
| error_name_ | DefaultParamHandler | [protected] |
| evaluate() | PILISNeutralLossModel | |
| generateModel() | PILISNeutralLossModel | |
| getDefaults() const | DefaultParamHandler | |
| getHMM() const | PILISNeutralLossModel | |
| getIntensitiesFromSpectrum_(const RichPeakSpectrum &train_spec, Map< String, DoubleReal > &pre_ints, DoubleReal ion_weight, const AASequence &peptide, UInt charge) | PILISNeutralLossModel | [protected] |
| getIons(std::vector< RichPeak1D > &peaks, const AASequence &peptide, DoubleReal initial_prob) | PILISNeutralLossModel | |
| getIons_(Map< String, DoubleReal > &intensities, DoubleReal initial_probability, const AASequence &precursor) | PILISNeutralLossModel | [protected] |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| hmm_precursor_ | PILISNeutralLossModel | [protected] |
| num_explicit_ | PILISNeutralLossModel | [protected] |
| operator=(const PILISNeutralLossModel &mode) | PILISNeutralLossModel | |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
| param_ | DefaultParamHandler | [protected] |
| PILISNeutralLossModel() | PILISNeutralLossModel | |
| PILISNeutralLossModel(const PILISNeutralLossModel &model) | PILISNeutralLossModel | |
| PILISNeutralLossModelGenerator class | PILISNeutralLossModel | [friend] |
| setHMM(const HiddenMarkovModel &model) | PILISNeutralLossModel | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| subsections_ | DefaultParamHandler | [protected] |
| train(const RichPeakSpectrum &spec, const AASequence &peptide, DoubleReal ion_weight, UInt charge, DoubleReal peptide_weight) | PILISNeutralLossModel | |
| trainIons_(DoubleReal initial_probability, const Map< String, DoubleReal > &intensities, const AASequence &peptide) | PILISNeutralLossModel | [protected] |
| updateMembers_() | PILISNeutralLossModel | [protected, virtual] |
| warn_empty_defaults_ | DefaultParamHandler | [protected] |
| ~DefaultParamHandler() | DefaultParamHandler | [virtual] |
| ~PILISNeutralLossModel() | PILISNeutralLossModel | [virtual] |