PSProteinInference Class Reference

This class implements protein inference for the precursor ion selection strategies. More...

#include <OpenMS/ANALYSIS/TARGETED/PSProteinInference.h>

List of all members.

Public Member Functions
	PSProteinInference ()
virtual	~PSProteinInference ()
Size	findMinimalProteinList (const std::vector< PeptideIdentification > &peptide_ids)
void	calculateProteinProbabilities (const std::vector< PeptideIdentification > &ids)
DoubleReal	getProteinProbability (const String &acc)
bool	isProteinInMinimalList (const String &acc)
Int	getNumberOfProtIds (DoubleReal protein_id_threshold)
Int	getNumberOfProtIdsPeptideRule (Int min_peptides, std::map< String, std::set< String > > &prot_id_counter)
void	setSolver (LPWrapper::SOLVER solver)
LPWrapper::SOLVER	getSolver ()
Private Attributes
std::vector< String >	minimal_protein_list_accessions_
std::vector< String >	accessions_
std::vector< DoubleReal >	probabilities_
LPWrapper::SOLVER	solver_

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Detailed Description

This class implements protein inference for the precursor ion selection strategies.

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Constructor & Destructor Documentation

PSProteinInference

(

)

virtual ~PSProteinInference

(

)

[virtual]

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Member Function Documentation

void calculateProteinProbabilities

(

const std::vector< PeptideIdentification > &

ids

)

Size findMinimalProteinList

(

const std::vector< PeptideIdentification > &

peptide_ids

)

Int getNumberOfProtIds

(

DoubleReal

protein_id_threshold

)

Int getNumberOfProtIdsPeptideRule	(	Int	min_peptides,
		std::map< String, std::set< String > > &	prot_id_counter
	)

DoubleReal getProteinProbability

(

const String &

acc

)

LPWrapper::SOLVER getSolver

(

)

[inline]

bool isProteinInMinimalList

(

const String &

acc

)

void setSolver

(

LPWrapper::SOLVER

solver

)

[inline]

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Member Data Documentation

std::vector<String> accessions_ [private]

std::vector<String> minimal_protein_list_accessions_ [private]

std::vector<DoubleReal> probabilities_ [private]

LPWrapper::SOLVER solver_ [private]