ParentPeakMower gets rid of high peaks that could stem from unfragmented precursor ions. More...

Inheritance diagram for ParentPeakMower:

Public Member Functions


	ParentPeakMower ()
	default constructor
	ParentPeakMower (const ParentPeakMower &source)
	copy constructor
virtual	~ParentPeakMower ()
	destructor


ParentPeakMower &	operator= (const ParentPeakMower &source)
	assignment operator


template<typename SpectrumType >
void	filterSpectrum (SpectrumType &spectrum)
void	filterPeakSpectrum (PeakSpectrum &spectrum)
void	filterPeakMap (PeakMap &exp)
Private Attributes
Size	default_charge_
bool	clean_all_charge_states_
bool	consider_NH3_loss_
bool	consider_H2O_loss_
DoubleReal	window_size_
bool	reduce_by_factor_
DoubleReal	factor_
bool	set_to_zero_

Detailed Description

ParentPeakMower gets rid of high peaks that could stem from unfragmented precursor ions.

Parameters of this class are:

Name	Type	Default	Description
window_size	float	2	The size of the m/z window where the peaks are removed, +/- window_size.
default_charge	int	2	If the precursor has no charge set, the default charge is assumed.
clean_all_charge_states	int	1	Set to 1 if precursor ions of all possible charge states should be removed.
consider_NH3_loss	int	1	Whether NH3 loss peaks from the precursor should be removed.
consider_H2O_loss	int	1	Whether H2O loss peaks from the precursor should be removed.
reduce_by_factor	int	0	Reduce the intensities of the precursor and related ions by a given factor (set 'set_to_zero' to 0).
factor	float	1000	Factor which is used to reduce the intensities if 'reduce_by_factor' is selected.
set_to_zero	int	1	Reduce the intensities of the precursor and related ions to zero.