, including all inherited members.
| addPeak_(std::vector< PeakShape > &peaks_DC, PeakArea_ &area, double left_width, double right_width, OptimizePeakDeconvolution::Data &data) | PeakPickerCWT | [protected] |
| begin_ | ProgressLogger | [mutable, protected] |
| check_defaults_ | DefaultParamHandler | [protected] |
| CMD enum value | ProgressLogger | |
| ConstPeakIterator typedef | PeakPickerCWT | |
| correlate_(const PeakShape &peak, const PeakArea_ &area, Int direction=0) const | PeakPickerCWT | [protected] |
| deconvolutePeak_(PeakShape &shape, std::vector< PeakShape > &peak_shapes, DoubleReal peak_bound_cwt) | PeakPickerCWT | [protected] |
| deconvolution_ | PeakPickerCWT | [protected] |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | [protected] |
| defaultsToParam_() | DefaultParamHandler | [protected] |
| determineChargeState_(std::vector< double > &peak_values) | PeakPickerCWT | [protected] |
| dlg_ | ProgressLogger | [mutable, protected] |
| end_ | ProgressLogger | [mutable, protected] |
| endProgress() const | ProgressLogger | |
| error_name_ | DefaultParamHandler | [protected] |
| estimatePeakWidth(const MSExperiment<> &input) | PeakPickerCWT | |
| fitPeakShape_(const PeakArea_ &area, bool enable_centroid_fit) | PeakPickerCWT | [protected] |
| fwhm_bound_ | PeakPickerCWT | [protected] |
| getDefaults() const | DefaultParamHandler | |
| getLogType() const | ProgressLogger | |
| getMaxPosition_(PeakIterator first, PeakIterator last, const ContinuousWaveletTransform &wt, PeakArea_ &area, Int distance_from_scan_border, Int ms_level, DoubleReal peak_bound_cwt, DoubleReal peak_bound_ms2_level_cwt, Int direction=1) | PeakPickerCWT | [protected] |
| getName() const | DefaultParamHandler | |
| getNumberOfPeaks_(ConstPeakIterator first, ConstPeakIterator last, std::vector< double > &peak_values, Int direction, DoubleReal resolution, ContinuousWaveletTransformNumIntegration &wt, DoubleReal peak_bound_cwt) | PeakPickerCWT | [protected] |
| getParameters() const | DefaultParamHandler | |
| getPeakArea_(const PeakArea_ &area, double &area_left, double &area_right) | PeakPickerCWT | [protected] |
| getPeakCentroid_(PeakArea_ &area) | PeakPickerCWT | [protected] |
| getPeakEndPoints_(PeakIterator first, PeakIterator last, PeakArea_ &area, Int distance_from_scan_border, Int &peak_left_index, Int &peak_right_index, ContinuousWaveletTransformNumIntegration &wt) | PeakPickerCWT | [protected] |
| getSubsections() const | DefaultParamHandler | |
| GUI enum value | ProgressLogger | |
| init_() | PeakPickerCWT | [protected] |
| initializeWT_(ContinuousWaveletTransformNumIntegration &wt, DoubleReal &peak_bound_cwt, DoubleReal &peak_bound_ms2_level_cwt) | PeakPickerCWT | [protected] |
| last_invoke_ | ProgressLogger | [mutable, protected] |
| LogType enum name | ProgressLogger | |
| lorentz_(double height, double lambda, double pos, double x) | PeakPickerCWT | [protected] |
| noise_level_ | PeakPickerCWT | [protected] |
| NONE enum value | ProgressLogger | |
| operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
| optimization_ | PeakPickerCWT | [protected] |
| param_ | DefaultParamHandler | [protected] |
| peak_bound_ | PeakPickerCWT | [protected] |
| peak_bound_ms2_level_ | PeakPickerCWT | [protected] |
| peak_corr_bound_ | PeakPickerCWT | [protected] |
| PeakIterator typedef | PeakPickerCWT | |
| PeakPickerCWT() | PeakPickerCWT | |
| pick(const MSSpectrum<> &input, MSSpectrum<> &output) | PeakPickerCWT | |
| pickExperiment(const MSExperiment<> &input, MSExperiment<> &output) | PeakPickerCWT | |
| ProgressLogger() | ProgressLogger | |
| radius_ | PeakPickerCWT | [protected] |
| recursion_depth_ | ProgressLogger | [protected, static] |
| scale_ | PeakPickerCWT | [protected] |
| setLogType(LogType type) const | ProgressLogger | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setProgress(SignedSize value) const | ProgressLogger | |
| signal_to_noise_ | PeakPickerCWT | [protected] |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| stop_watch_ | ProgressLogger | [mutable, protected] |
| subsections_ | DefaultParamHandler | [protected] |
| two_d_optimization_ | PeakPickerCWT | [protected] |
| type_ | ProgressLogger | [mutable, protected] |
| updateMembers_() | PeakPickerCWT | [protected] |
| OpenMS::DefaultParamHandler::updateMembers_() | DefaultParamHandler | [protected, virtual] |
| value_ | ProgressLogger | [mutable, protected] |
| warn_empty_defaults_ | DefaultParamHandler | [protected] |
| ~DefaultParamHandler() | DefaultParamHandler | [virtual] |
| ~PeakPickerCWT() | PeakPickerCWT | [virtual] |
| ~ProgressLogger() | ProgressLogger | |