PeptideAndProteinQuant Member List

This is the complete list of members for PeptideAndProteinQuant, including all inherited members.

check_defaults_	DefaultParamHandler	[protected]
countPeptides_(std::vector< PeptideIdentification > &peptides)	PeptideAndProteinQuant	[private]
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
defaults_	DefaultParamHandler	[protected]
defaultsToParam_()	DefaultParamHandler	[protected]
error_name_	DefaultParamHandler	[protected]
getAccession_(const std::set< String > &pep_accessions, std::map< String, String > &accession_to_leader)	PeptideAndProteinQuant	[private]
getAnnotation_(std::vector< PeptideIdentification > &peptides)	PeptideAndProteinQuant	[private]
getDefaults() const	DefaultParamHandler
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getPeptideResults()	PeptideAndProteinQuant
getProteinResults()	PeptideAndProteinQuant
getStatistics()	PeptideAndProteinQuant
getSubsections() const	DefaultParamHandler
normalizePeptides_()	PeptideAndProteinQuant	[private]
operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	[virtual]
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	[virtual]
orderBest_(const std::map< T, SampleAbundances > abundances, std::vector< T > &result)	PeptideAndProteinQuant	[inline, private]
param_	DefaultParamHandler	[protected]
pep_quant_	PeptideAndProteinQuant	[private]
PeptideAndProteinQuant()	PeptideAndProteinQuant
PeptideQuant typedef	PeptideAndProteinQuant
prot_quant_	PeptideAndProteinQuant	[private]
ProteinQuant typedef	PeptideAndProteinQuant
quantifyFeature_(const FeatureHandle &feature, const PeptideHit &hit)	PeptideAndProteinQuant	[private]
quantifyPeptides(FeatureMap<> &features)	PeptideAndProteinQuant
quantifyPeptides(ConsensusMap &consensus)	PeptideAndProteinQuant
quantifyPeptides_()	PeptideAndProteinQuant	[private]
quantifyProteins(const ProteinIdentification &proteins=ProteinIdentification())	PeptideAndProteinQuant
SampleAbundances typedef	PeptideAndProteinQuant
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
stats_	PeptideAndProteinQuant	[private]
subsections_	DefaultParamHandler	[protected]
updateMembers_()	PeptideAndProteinQuant	[private, virtual]
warn_empty_defaults_	DefaultParamHandler	[protected]
~DefaultParamHandler()	DefaultParamHandler	[virtual]
~PeptideAndProteinQuant()	PeptideAndProteinQuant	[inline]