Representation of a protein hit. More...
#include <OpenMS/METADATA/ProteinHit.h>
Classes | |
| class | ScoreLess |
| Lesser predicate for scores of hits. More... | |
| class | ScoreMore |
| Greater predicate for scores of hits. More... | |
Public Member Functions | |
| ProteinHit & | operator= (const ProteinHit &source) |
| assignment operator | |
| ProteinHit & | operator= (const MetaInfoInterface &source) |
| assignment for MetaInfo | |
| bool | operator== (const ProteinHit &rhs) const |
| Equality operator. | |
| bool | operator!= (const ProteinHit &rhs) const |
| Inequality operator. | |
Constructors and Destructor | |
| ProteinHit () | |
| default constructor | |
| ProteinHit (DoubleReal score, UInt rank, String accession, String sequence) | |
| values constructor | |
| ProteinHit (const ProteinHit &source) | |
| copy constructor | |
| virtual | ~ProteinHit () |
| destructor | |
Accessors | |
| Real | getScore () const |
| returns the score of the protein hit | |
| UInt | getRank () const |
| returns the rank of the protein hit | |
| const String & | getSequence () const |
| returns the protein sequence | |
| const String & | getAccession () const |
| returns the accession of the protein | |
| DoubleReal | getCoverage () const |
| returns the coverage (in percent) of the protein hit based upon matched peptides | |
| void | setScore (const DoubleReal score) |
| sets the score of the protein hit | |
| void | setRank (UInt newrank) |
| sets the rank | |
| void | setSequence (const String &sequence) |
| sets the protein sequence | |
| void | setAccession (const String &accession) |
| sets the accession of the protein | |
| void | setCoverage (const DoubleReal coverage) |
| sets the coverage (in percent) of the protein hit based upon matched peptides | |
Protected Attributes | |
| Real | score_ |
| the score of the protein hit | |
| UInt | rank_ |
| the position(rank) where the hit appeared in the hit list | |
| String | accession_ |
| the protein identifier | |
| String | sequence_ |
| the amino acid sequence of the protein hit | |
| DoubleReal | coverage_ |
| coverage of the protein based upon the matched peptide sequences | |
Detailed Description
Representation of a protein hit.
It contains the fields score, score_type, rank, accession, sequence and coverage.
Constructor & Destructor Documentation
| ProteinHit | ( | ) |
default constructor
| ProteinHit | ( | DoubleReal | score, | |
| UInt | rank, | |||
| String | accession, | |||
| String | sequence | |||
| ) |
values constructor
| ProteinHit | ( | const ProteinHit & | source | ) |
copy constructor
| virtual ~ProteinHit | ( | ) | [virtual] |
destructor
Member Function Documentation
| const String& getAccession | ( | ) | const |
returns the accession of the protein
| DoubleReal getCoverage | ( | ) | const |
returns the coverage (in percent) of the protein hit based upon matched peptides
| UInt getRank | ( | ) | const |
returns the rank of the protein hit
| Real getScore | ( | ) | const |
returns the score of the protein hit
| const String& getSequence | ( | ) | const |
returns the protein sequence
| bool operator!= | ( | const ProteinHit & | rhs | ) | const |
Inequality operator.
| ProteinHit& operator= | ( | const MetaInfoInterface & | source | ) |
assignment for MetaInfo
Reimplemented from MetaInfoInterface.
| ProteinHit& operator= | ( | const ProteinHit & | source | ) |
assignment operator
| bool operator== | ( | const ProteinHit & | rhs | ) | const |
Equality operator.
| void setAccession | ( | const String & | accession | ) |
sets the accession of the protein
Referenced by DBAdapter::loadExperiment(), and MRMFeatureFinderScoring::pickExperiment().
| void setCoverage | ( | const DoubleReal | coverage | ) |
sets the coverage (in percent) of the protein hit based upon matched peptides
| void setRank | ( | UInt | newrank | ) |
sets the rank
Referenced by DBAdapter::loadExperiment().
| void setScore | ( | const DoubleReal | score | ) |
sets the score of the protein hit
Referenced by DBAdapter::loadExperiment().
| void setSequence | ( | const String & | sequence | ) |
sets the protein sequence
Referenced by DBAdapter::loadExperiment(), and MRMFeatureFinderScoring::pickExperiment().
Member Data Documentation
String accession_ [protected] |
the protein identifier
DoubleReal coverage_ [protected] |
coverage of the protein based upon the matched peptide sequences
| OpenMS / TOPP release 1.10.0 | Documentation generated on Thu Mar 7 2013 09:42:56 using doxygen 1.7.1 |