ProteinIdentification Member List

This is the complete list of members for ProteinIdentification, including all inherited members.

assignRanks()	ProteinIdentification
AVERAGE enum value	ProteinIdentification
CHYMOTRYPSIN enum value	ProteinIdentification
clearMetaInfo()	MetaInfoInterface
computeCoverage(const std::vector< PeptideIdentification > &pep_ids)	ProteinIdentification
createIfNotExists_()	MetaInfoInterface	[inline, protected]
date_	ProteinIdentification	[protected]
DigestionEnzyme enum name	ProteinIdentification
findHit(const String &accession)	ProteinIdentification
getDateTime() const	ProteinIdentification
getHits() const	ProteinIdentification
getHits()	ProteinIdentification
getIdentifier() const	ProteinIdentification
getIndistinguishableProteins() const	ProteinIdentification
getIndistinguishableProteins()	ProteinIdentification
getKeys(std::vector< String > &keys) const	MetaInfoInterface
getKeys(std::vector< UInt > &keys) const	MetaInfoInterface
getMetaValue(const String &name) const	MetaInfoInterface
getMetaValue(UInt index) const	MetaInfoInterface
getProteinGroups() const	ProteinIdentification
getProteinGroups()	ProteinIdentification
getScoreType() const	ProteinIdentification
getSearchEngine() const	ProteinIdentification
getSearchEngineVersion() const	ProteinIdentification
getSearchParameters() const	ProteinIdentification
getSignificanceThreshold() const	ProteinIdentification
higher_score_better_	ProteinIdentification	[protected]
HitType typedef	ProteinIdentification
id_	ProteinIdentification	[protected]
indistinguishable_proteins_	ProteinIdentification	[protected]
insertHit(const ProteinHit &input)	ProteinIdentification
insertIndistinguishableProteins(const ProteinGroup &group)	ProteinIdentification
insertProteinGroup(const ProteinGroup &group)	ProteinIdentification
isHigherScoreBetter() const	ProteinIdentification
isMetaEmpty() const	MetaInfoInterface
meta_	MetaInfoInterface	[protected]
MetaInfoInterface()	MetaInfoInterface
MetaInfoInterface(const MetaInfoInterface &rhs)	MetaInfoInterface
metaRegistry()	MetaInfoInterface	[static]
metaValueExists(const String &name) const	MetaInfoInterface
metaValueExists(UInt index) const	MetaInfoInterface
MONOISOTOPIC enum value	ProteinIdentification
NamesOfDigestionEnzyme	ProteinIdentification	[static]
NamesOfPeakMassType	ProteinIdentification	[static]
NO_ENZYME enum value	ProteinIdentification
operator!=(const ProteinIdentification &rhs) const	ProteinIdentification
OpenMS::MetaInfoInterface::operator!=(const MetaInfoInterface &rhs) const	MetaInfoInterface
operator=(const ProteinIdentification &source)	ProteinIdentification
OpenMS::MetaInfoInterface::operator=(const MetaInfoInterface &rhs)	MetaInfoInterface
operator==(const ProteinIdentification &rhs) const	ProteinIdentification
OpenMS::MetaInfoInterface::operator==(const MetaInfoInterface &rhs) const	MetaInfoInterface
PeakMassType enum name	ProteinIdentification
PEPSIN_A enum value	ProteinIdentification
PROTEASE_K enum value	ProteinIdentification
protein_groups_	ProteinIdentification	[protected]
protein_hits_	ProteinIdentification	[protected]
protein_score_type_	ProteinIdentification	[protected]
protein_significance_threshold_	ProteinIdentification	[protected]
ProteinIdentification()	ProteinIdentification
ProteinIdentification(const ProteinIdentification &source)	ProteinIdentification
removeMetaValue(const String &name)	MetaInfoInterface
removeMetaValue(UInt index)	MetaInfoInterface
search_engine_	ProteinIdentification	[protected]
search_engine_version_	ProteinIdentification	[protected]
search_parameters_	ProteinIdentification	[protected]
setDateTime(const DateTime &date)	ProteinIdentification
setHigherScoreBetter(bool higher_is_better)	ProteinIdentification
setHits(const std::vector< ProteinHit > &hits)	ProteinIdentification
setIdentifier(const String &id)	ProteinIdentification
setMetaValue(const String &name, const DataValue &value)	MetaInfoInterface
setMetaValue(UInt index, const DataValue &value)	MetaInfoInterface
setScoreType(const String &type)	ProteinIdentification
setSearchEngine(const String &search_engine)	ProteinIdentification
setSearchEngineVersion(const String &search_engine_version)	ProteinIdentification
setSearchParameters(const SearchParameters &search_parameters)	ProteinIdentification
setSignificanceThreshold(DoubleReal value)	ProteinIdentification
SIZE_OF_DIGESTIONENZYME enum value	ProteinIdentification
SIZE_OF_PEAKMASSTYPE enum value	ProteinIdentification
sort()	ProteinIdentification
TRYPSIN enum value	ProteinIdentification
UNKNOWN_ENZYME enum value	ProteinIdentification
~MetaInfoInterface()	MetaInfoInterface
~ProteinIdentification()	ProteinIdentification	[virtual]