ProteinInference Class Reference

[experimental class] given a peptide quantitation, infer corresponding protein quantities More...

#include <OpenMS/ANALYSIS/QUANTITATION/ProteinInference.h>

List of all members.

Public Types
typedef Peak2D::IntensityType	IntensityType
Public Member Functions
	ProteinInference ()
	Constructor.
	ProteinInference (const ProteinInference &cp)
	copy constructor
ProteinInference &	operator= (const ProteinInference &rhs)
	assignment operator
void	infer (ConsensusMap &consensus_map, const UInt reference_map)
	given a peptide quantitation, infer corresponding protein quantities
Protected Member Functions
void	infer_ (ConsensusMap &consensus_map, const size_t protein_idenfication_index, const UInt reference_map)
bool	sortByUnique_ (std::vector< PeptideHit > &peptide_hits_local, const bool is_higher_score_better)

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Detailed Description

[experimental class] given a peptide quantitation, infer corresponding protein quantities

Infers protein ratios from peptide ratios (currently using unique peptides only). Use the IDMapper class to add protein and peptide information to a quantitative ConsensusMap prior to this step.

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Member Typedef Documentation

typedef Peak2D::IntensityType IntensityType

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Constructor & Destructor Documentation

ProteinInference

(

)

Constructor.

ProteinInference

(

const ProteinInference &

cp

)

copy constructor

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Member Function Documentation

void infer	(	ConsensusMap &	consensus_map,
		const UInt	reference_map
	)

given a peptide quantitation, infer corresponding protein quantities

Infers protein ratios from peptide ratios (currently using unique peptides only). Use the IDMapper class to add protein and peptide information to a quantitative ConsensusMap prior to this step.

Parameters:

	consensus_map	Peptide quantitation with ProteinIdentifications attached, where Protein quantitation will be attached
	reference_map	Index of (iTRAQ) reference channel within the consensus map

Exceptions:

Exception::MissingInformation

if Protein/PeptideIdentifications are missing

void infer_	(	ConsensusMap &	consensus_map,
		const size_t	protein_idenfication_index,
		const UInt	reference_map
	)			[protected]

ProteinInference& operator=

(

const ProteinInference &

rhs

)

assignment operator

bool sortByUnique_	(	std::vector< PeptideHit > &	peptide_hits_local,
		const bool	is_higher_score_better
	)			[protected]