This is the complete list of members for
RTSimulation, including all inherited members.
| calculateMT_(FeatureMapSim &features, std::vector< DoubleReal > &predicted_retention_times) | RTSimulation | [private] |
| check_defaults_ | DefaultParamHandler | [protected] |
| createExperiment(MSSimExperiment &experiment) | RTSimulation | |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | [protected] |
| defaultsToParam_() | DefaultParamHandler | [protected] |
| egh_tau_location_ | RTSimulation | [private] |
| egh_tau_scale_ | RTSimulation | [private] |
| egh_variance_location_ | RTSimulation | [private] |
| egh_variance_scale_ | RTSimulation | [private] |
| error_name_ | DefaultParamHandler | [protected] |
| getChargeContribution_(Map< String, double > &q_cterm, Map< String, double > &q_nterm, Map< String, double > &q_aa_basic, Map< String, double > &q_aa_acidic) | RTSimulation | [private] |
| getDefaults() const | DefaultParamHandler | |
| getGradientTime() const | RTSimulation | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| gradient_max_ | RTSimulation | [private] |
| gradient_min_ | RTSimulation | [private] |
| isRTColumnOn() const | RTSimulation | |
| noRTColumn_(FeatureMapSim &) | RTSimulation | [private] |
| operator=(const RTSimulation &source) | RTSimulation | |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
| param_ | DefaultParamHandler | [protected] |
| predictContaminantsRT(FeatureMapSim &) | RTSimulation | |
| predictRT(FeatureMapSim &features) | RTSimulation | |
| rnd_gen_ | RTSimulation | [protected] |
| rt_model_file_ | RTSimulation | [private] |
| rt_sampling_rate_ | RTSimulation | [private] |
| RTSimulation(const SimRandomNumberGenerator &random_generator) | RTSimulation | |
| RTSimulation(const RTSimulation &source) | RTSimulation | |
| RTSimulation() | RTSimulation | [private] |
| setDefaultParams_() | RTSimulation | [private] |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| smoothRTDistortion_(MSSimExperiment &experiment) | RTSimulation | [private] |
| subsections_ | DefaultParamHandler | [protected] |
| total_gradient_time_ | RTSimulation | [private] |
| updateMembers_() | RTSimulation | [protected, virtual] |
| warn_empty_defaults_ | DefaultParamHandler | [protected] |
| wrapSVM(std::vector< AASequence > &peptide_sequences, std::vector< DoubleReal > &predicted_retention_times) | RTSimulation | |
| ~DefaultParamHandler() | DefaultParamHandler | [virtual] |
| ~RTSimulation() | RTSimulation | [virtual] |