, including all inherited members.
| add1DSignal_(Feature &feature, MSSimExperiment &experiment, MSSimExperiment &experiment_ct) | RawMSSignalSimulation | [protected] |
| add2DSignal_(Feature &feature, MSSimExperiment &experiment, MSSimExperiment &experiment_ct) | RawMSSignalSimulation | [protected] |
| addBaseLine_(MSSimExperiment &experiment, SimCoordinateType minimal_mz_measurement_limit) | RawMSSignalSimulation | [protected] |
| addDetectorNoise_(MSSimExperiment &experiment) | RawMSSignalSimulation | [protected] |
| addShotNoise_(MSSimExperiment &experiment, SimCoordinateType minimal_mz_measurement_limit, SimCoordinateType maximal_mz_measurement_limit) | RawMSSignalSimulation | [protected] |
| addWhiteNoise_(MSSimExperiment &experiment) | RawMSSignalSimulation | [protected] |
| begin_ | ProgressLogger | [mutable, protected] |
| check_defaults_ | DefaultParamHandler | [protected] |
| chooseElutionProfile_(EGHModel *const elutionmodel, Feature &feature, const double scale, const DoubleReal rt_sampling_rate, const MSSimExperiment &experiment) | RawMSSignalSimulation | [protected] |
| CMD enum value | ProgressLogger | |
| compressSignals_(MSSimExperiment &experiment) | RawMSSignalSimulation | [protected] |
| contaminants_ | RawMSSignalSimulation | [protected] |
| contaminants_loaded_ | RawMSSignalSimulation | [protected] |
| createContaminants_(FeatureMapSim &contaminants, MSSimExperiment &exp, MSSimExperiment &exp_ct) | RawMSSignalSimulation | [protected] |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | [protected] |
| defaultsToParam_() | DefaultParamHandler | [protected] |
| dlg_ | ProgressLogger | [mutable, protected] |
| end_ | ProgressLogger | [mutable, protected] |
| endProgress() const | ProgressLogger | |
| error_name_ | DefaultParamHandler | [protected] |
| generateRawSignals(FeatureMapSim &features, MSSimExperiment &experiment, MSSimExperiment &experiment_ct, FeatureMapSim &contaminants) | RawMSSignalSimulation | |
| getDefaults() const | DefaultParamHandler | |
| getFeatureScaledIntensity_(const SimIntensityType feature_intensity, const SimIntensityType natural_scaling_factor) | RawMSSignalSimulation | [protected] |
| getLogType() const | ProgressLogger | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getPeakWidth_(const DoubleReal mz, const bool is_gaussian) const | RawMSSignalSimulation | [protected] |
| getResolution_(const DoubleReal query_mz, const DoubleReal resolution, const RESOLUTIONMODEL model) const | RawMSSignalSimulation | [protected] |
| getSamplingGrid_(std::vector< SimCoordinateType > &grid, const SimCoordinateType mz_min, const SimCoordinateType mz_max, const Int step_Da) | RawMSSignalSimulation | [protected] |
| getSubsections() const | DefaultParamHandler | |
| grid_ | RawMSSignalSimulation | [protected] |
| GUI enum value | ProgressLogger | |
| IM_ALL enum value | RawMSSignalSimulation | [protected] |
| IM_ESI enum value | RawMSSignalSimulation | [protected] |
| IM_MALDI enum value | RawMSSignalSimulation | [protected] |
| intensity_scale_ | RawMSSignalSimulation | [protected] |
| intensity_scale_stddev_ | RawMSSignalSimulation | [protected] |
| IONIZATIONMETHOD enum name | RawMSSignalSimulation | [protected] |
| last_invoke_ | ProgressLogger | [mutable, protected] |
| loadContaminants() | RawMSSignalSimulation | |
| LogType enum name | ProgressLogger | |
| mz_error_mean_ | RawMSSignalSimulation | [protected] |
| mz_error_stddev_ | RawMSSignalSimulation | [protected] |
| NONE enum value | ProgressLogger | |
| operator=(const RawMSSignalSimulation &source) | RawMSSignalSimulation | |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
| param_ | DefaultParamHandler | [protected] |
| PROFILESHAPE enum name | RawMSSignalSimulation | [protected] |
| ProgressLogger() | ProgressLogger | |
| RawMSSignalSimulation(const SimRandomNumberGenerator &rng) | RawMSSignalSimulation | |
| RawMSSignalSimulation(const RawMSSignalSimulation &source) | RawMSSignalSimulation | |
| RawMSSignalSimulation() | RawMSSignalSimulation | [protected] |
| recursion_depth_ | ProgressLogger | [protected, static] |
| res_base_ | RawMSSignalSimulation | [protected] |
| RES_CONSTANT enum value | RawMSSignalSimulation | [protected] |
| RES_LINEAR enum value | RawMSSignalSimulation | [protected] |
| res_model_ | RawMSSignalSimulation | [protected] |
| RES_SQRT enum value | RawMSSignalSimulation | [protected] |
| RESOLUTIONMODEL enum name | RawMSSignalSimulation | [protected] |
| rnd_gen_ | RawMSSignalSimulation | [protected] |
| RT_GAUSSIAN enum value | RawMSSignalSimulation | [protected] |
| RT_RECTANGULAR enum value | RawMSSignalSimulation | [protected] |
| samplePeptideModel1D_(const IsotopeModel &iso, const SimCoordinateType mz_start, const SimCoordinateType mz_end, MSSimExperiment &experiment, MSSimExperiment &experiment_ct, Feature &activeFeature) | RawMSSignalSimulation | [protected] |
| samplePeptideModel2D_(const ProductModel< 2 > &pm, const SimCoordinateType mz_start, const SimCoordinateType mz_end, SimCoordinateType rt_start, SimCoordinateType rt_end, MSSimExperiment &experiment, MSSimExperiment &experiment_ct, Feature &activeFeature) | RawMSSignalSimulation | [protected] |
| sampling_points_per_FWHM_ | RawMSSignalSimulation | [protected] |
| setDefaultParams_() | RawMSSignalSimulation | [protected] |
| setLogType(LogType type) const | ProgressLogger | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setProgress(SignedSize value) const | ProgressLogger | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| stop_watch_ | ProgressLogger | [mutable, protected] |
| subsections_ | DefaultParamHandler | [protected] |
| THREADED_RANDOM_NUMBER_POOL_SIZE_ | RawMSSignalSimulation | [protected, static] |
| threaded_random_numbers_ | RawMSSignalSimulation | [protected] |
| threaded_random_numbers_index_ | RawMSSignalSimulation | [protected] |
| type_ | ProgressLogger | [mutable, protected] |
| updateMembers_() | RawMSSignalSimulation | [protected] |
| OpenMS::DefaultParamHandler::updateMembers_() | DefaultParamHandler | [protected, virtual] |
| value_ | ProgressLogger | [mutable, protected] |
| warn_empty_defaults_ | DefaultParamHandler | [protected] |
| ~DefaultParamHandler() | DefaultParamHandler | [virtual] |
| ~ProgressLogger() | ProgressLogger | |
| ~RawMSSignalSimulation() | RawMSSignalSimulation | [virtual] |