ResidueModification Member List

This is the complete list of members for ResidueModification, including all inherited members.

AA_SUBSTITUTION enum value	ResidueModification
addSynonym(const String &synonym)	ResidueModification
ANYWHERE enum value	ResidueModification
ARTIFACT enum value	ResidueModification
average_mass_	ResidueModification	[protected]
C_TERM enum value	ResidueModification
CHEMICAL_DERIVATIVE enum value	ResidueModification
classification_	ResidueModification	[protected]
COTRANSLATIONAL enum value	ResidueModification
diff_average_mass_	ResidueModification	[protected]
diff_formula_	ResidueModification	[protected]
diff_mono_mass_	ResidueModification	[protected]
formula_	ResidueModification	[protected]
full_id_	ResidueModification	[protected]
full_name_	ResidueModification	[protected]
getAverageMass() const	ResidueModification
getDiffAverageMass() const	ResidueModification
getDiffFormula() const	ResidueModification
getDiffMonoMass() const	ResidueModification
getFormula() const	ResidueModification
getFullId() const	ResidueModification
getFullName() const	ResidueModification
getId() const	ResidueModification
getMonoMass() const	ResidueModification
getName() const	ResidueModification
getNeutralLossAverageMass() const	ResidueModification
getNeutralLossDiffFormula() const	ResidueModification
getNeutralLossMonoMass() const	ResidueModification
getOrigin() const	ResidueModification
getPSIMODAccession() const	ResidueModification
getSourceClassification() const	ResidueModification
getSourceClassificationName(Source_Classification classification=NUMBER_OF_SOURCE_CLASSIFICATIONS) const	ResidueModification
getSynonyms() const	ResidueModification
getTermSpecificity() const	ResidueModification
getTermSpecificityName(Term_Specificity=NUMBER_OF_TERM_SPECIFICITY) const	ResidueModification
getUniModAccession() const	ResidueModification
hasNeutralLoss() const	ResidueModification
HYPOTHETICAL enum value	ResidueModification
id_	ResidueModification	[protected]
ISOTOPIC_LABEL enum value	ResidueModification
mono_mass_	ResidueModification	[protected]
MULTIPLE enum value	ResidueModification
N_TERM enum value	ResidueModification
name_	ResidueModification	[protected]
NATURAL enum value	ResidueModification
neutral_loss_average_mass_	ResidueModification	[protected]
neutral_loss_diff_formula_	ResidueModification	[protected]
neutral_loss_mono_mass_	ResidueModification	[protected]
NLINKED_GLYCOSYLATION enum value	ResidueModification
NONSTANDARD_RESIDUE enum value	ResidueModification
NUMBER_OF_SOURCE_CLASSIFICATIONS enum value	ResidueModification
NUMBER_OF_TERM_SPECIFICITY enum value	ResidueModification
OLINKED_GLYCOSYLATION enum value	ResidueModification
operator!=(const ResidueModification &modification) const	ResidueModification
operator=(const ResidueModification &modification)	ResidueModification
operator==(const ResidueModification &modification) const	ResidueModification
origin_	ResidueModification	[protected]
OTHER enum value	ResidueModification
OTHER_GLYCOSYLATION enum value	ResidueModification
POSTTRANSLATIONAL enum value	ResidueModification
PRETRANSLATIONAL enum value	ResidueModification
psi_mod_accession_	ResidueModification	[protected]
ResidueModification()	ResidueModification
ResidueModification(const ResidueModification &modification)	ResidueModification
setAverageMass(DoubleReal mass)	ResidueModification
setDiffAverageMass(DoubleReal mass)	ResidueModification
setDiffFormula(const EmpiricalFormula &diff_formula)	ResidueModification
setDiffMonoMass(DoubleReal mass)	ResidueModification
setFormula(const String &composition)	ResidueModification
setFullId(const String &full_id)	ResidueModification
setFullName(const String &full_name)	ResidueModification
setId(const String &id)	ResidueModification
setMonoMass(DoubleReal mass)	ResidueModification
setName(const String &name)	ResidueModification
setNeutralLossAverageMass(DoubleReal average_mass)	ResidueModification
setNeutralLossDiffFormula(const EmpiricalFormula &loss)	ResidueModification
setNeutralLossMonoMass(DoubleReal mono_mass)	ResidueModification
setOrigin(const String &origin)	ResidueModification
setPSIMODAccession(const String &id)	ResidueModification
setSourceClassification(const String &classification)	ResidueModification
setSourceClassification(Source_Classification classification)	ResidueModification
setSynonyms(const std::set< String > &synonyms)	ResidueModification
setTermSpecificity(Term_Specificity term_spec)	ResidueModification
setTermSpecificity(const String &name)	ResidueModification
setUniModAccession(const String &id)	ResidueModification
Source_Classification enum name	ResidueModification
synonyms_	ResidueModification	[protected]
term_spec_	ResidueModification	[protected]
Term_Specificity enum name	ResidueModification
unimod_accession_	ResidueModification	[protected]
UNKNOWN enum value	ResidueModification
~ResidueModification()	ResidueModification	[virtual]