Clustering implementation for SILAC stuff. More...
#include <OpenMS/COMPARISON/CLUSTERING/SILACClustering.h>
Inheritance diagram for SILACClustering:
Public Member Functions | |
| SILACClustering (const PointCoordinate &cluster_dimension, DoubleReal rt_min, DoubleReal rt_max_spacing) | |
| void | cluster () |
| Perform clustering of all existing points. | |
Public Attributes | |
| const DoubleReal | rt_min |
| const DoubleReal | rt_max_spacing |
Protected Member Functions | |
| void | removeSmall_ () |
| Remove clusters smaller then rt_min. | |
| void | joinLarge_ () |
| Join clusters with holes less then rt_max_spacing. | |
Detailed Description
Clustering implementation for SILAC stuff.
It cleans up the results of the hierarchical clustering for the search of labeled and unlabeled peptide data. It removes too small clusters and joins clusters with small gaps that the clustering split on purpose.
- Warning:
- The cleanups will not work on random data
Constructor & Destructor Documentation
| SILACClustering | ( | const PointCoordinate & | cluster_dimension, | |
| DoubleReal | rt_min, | |||
| DoubleReal | rt_max_spacing | |||
| ) | [inline] |
Member Function Documentation
| void cluster | ( | ) |
Perform clustering of all existing points.
Reimplemented from HierarchicalClustering< SILACPattern * >.
| void joinLarge_ | ( | ) | [protected] |
Join clusters with holes less then rt_max_spacing.
| void removeSmall_ | ( | ) | [protected] |
Remove clusters smaller then rt_min.
Member Data Documentation
| const DoubleReal rt_max_spacing |
| const DoubleReal rt_min |
| OpenMS / TOPP release 1.10.0 | Documentation generated on Thu Mar 7 2013 09:42:50 using doxygen 1.7.1 |