Filtering for SILAC data. More...

#include <OpenMS/FILTERING/DATAREDUCTION/SILACFiltering.h>

Inheritance diagram for SILACFiltering:

Classes
struct	BlacklistEntry
	structure for blacklist More...
class	SpectrumInterpolation
	Wrapper class for spectrum interpolation. More...
Public Types
typedef std::vector< SILACFilter >	Filters
Public Member Functions
	SILACFiltering (MSExperiment< Peak1D > &exp, const PeakWidthEstimator::Result &, const DoubleReal intensity_cutoff, const String debug_filebase_="")
	detailed constructor
void	addFilter (SILACFilter &filter)
	adds a new filter to the filtering
void	filterDataPoints ()
	starts the filtering based on the added filters
Public Attributes
Filters	filters_
	holds all filters used in the filtering
const PeakWidthEstimator::Result	peak_width
	peak-width equation
std::multimap< DoubleReal, BlacklistEntry >	blacklist
	holds the range that is blacklisted for other filters and the filter that generated the blacklist entry
Private Member Functions
void	pickSeeds_ ()
	pick data seeds
void	filterSeeds_ ()
	apply filtering to picked data seeds
Private Attributes
DoubleReal	intensity_cutoff_
	minimal intensity of SILAC features
MSExperiment< Peak1D > &	exp_
	raw data
MSExperiment< Peak1D >	picked_exp_
	picked data
MSExperiment< Peak1D >	picked_exp_seeds_
	picked data seeds
const String	debug_filebase_

Detailed Description

Filtering for SILAC data.

This filtering can be used to extract SILAC features from an MS experiment. Several SILACFilters can be added to the filtering to search for specific SILAC patterns.

See also:: SILACFilter

Member Typedef Documentation

typedef std::vector<SILACFilter> Filters

Constructor & Destructor Documentation

SILACFiltering	(	MSExperiment< Peak1D > &	exp,
		const PeakWidthEstimator::Result &	,
		const DoubleReal	intensity_cutoff,
		const String	debug_filebase_ = `""`
	)