, including all inherited members.
| addConvexHull(const FeatureFinderDefs::IndexSet &set, Feature &feature) const | FeaFiModule< PeakType, FeatureType > | [inline] |
| Base typedef | SimpleExtender< PeakType, FeatureType > | |
| boundary_ | SimpleExtender< PeakType, FeatureType > | [protected] |
| ChargedIndexSet typedef | FeatureFinderDefs | |
| check_defaults_ | DefaultParamHandler | [protected] |
| checkNeighbour_(const IndexPair &index) | SimpleExtender< PeakType, FeatureType > | [inline, protected] |
| computePeakPriority_(const IndexPair &index) | SimpleExtender< PeakType, FeatureType > | [inline, protected] |
| CoordinateType typedef | SimpleExtender< PeakType, FeatureType > | |
| OpenMS::FeaFiModule::CoordinateType typedef | FeaFiModule< PeakType, FeatureType > | |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | [protected] |
| defaultsToParam_() | DefaultParamHandler | [protected] |
| dist_mz_down_ | SimpleExtender< PeakType, FeatureType > | [protected] |
| dist_mz_up_ | SimpleExtender< PeakType, FeatureType > | [protected] |
| dist_rt_down_ | SimpleExtender< PeakType, FeatureType > | [protected] |
| dist_rt_up_ | SimpleExtender< PeakType, FeatureType > | [protected] |
| error_name_ | DefaultParamHandler | [protected] |
| extend(const ChargedIndexSet &seed_region, ChargedIndexSet &result_region) | SimpleExtender< PeakType, FeatureType > | [inline] |
| FeaFiModule(const MSExperiment< PeakType > *map, FeatureMap< FeatureType > *features, FeatureFinder *ff) | FeaFiModule< PeakType, FeatureType > | [inline] |
| FeatureMapType typedef | FeaFiModule< PeakType, FeatureType > | |
| features_ | FeaFiModule< PeakType, FeatureType > | [protected] |
| ff_ | FeaFiModule< PeakType, FeatureType > | [protected] |
| Flag enum name | FeatureFinderDefs | |
| getDefaults() const | DefaultParamHandler | |
| getName() const | DefaultParamHandler | |
| getNextMz(FeatureFinderDefs::IndexPair &index) const | FeaFiModule< PeakType, FeatureType > | [inline] |
| getNextRt(FeatureFinderDefs::IndexPair &index) | FeaFiModule< PeakType, FeatureType > | [inline] |
| getParameters() const | DefaultParamHandler | |
| getPeakIntensity(const FeatureFinderDefs::IndexPair &index) const | FeaFiModule< PeakType, FeatureType > | [inline] |
| getPeakMz(const FeatureFinderDefs::IndexPair &index) const | FeaFiModule< PeakType, FeatureType > | [inline] |
| getPeakRt(const FeatureFinderDefs::IndexPair &index) const | FeaFiModule< PeakType, FeatureType > | [inline] |
| getPrevMz(FeatureFinderDefs::IndexPair &index) const | FeaFiModule< PeakType, FeatureType > | [inline] |
| getPrevRt(FeatureFinderDefs::IndexPair &index) | FeaFiModule< PeakType, FeatureType > | [inline] |
| getSubsections() const | DefaultParamHandler | |
| IndexPair typedef | FeatureFinderDefs | |
| IndexSet typedef | FeatureFinderDefs | |
| intensity_threshold_ | SimpleExtender< PeakType, FeatureType > | [protected] |
| IntensityType typedef | SimpleExtender< PeakType, FeatureType > | |
| OpenMS::FeaFiModule::IntensityType typedef | FeaFiModule< PeakType, FeatureType > | |
| isTooFarFromCentroid_(const IndexPair &index) | SimpleExtender< PeakType, FeatureType > | [inline, protected] |
| last_pos_extracted_ | SimpleExtender< PeakType, FeatureType > | [protected] |
| map_ | FeaFiModule< PeakType, FeatureType > | [protected] |
| MapType typedef | FeaFiModule< PeakType, FeatureType > | |
| moveMzDown_(const IndexPair &index) | SimpleExtender< PeakType, FeatureType > | [inline, protected] |
| moveMzUp_(const IndexPair &index) | SimpleExtender< PeakType, FeatureType > | [inline, protected] |
| moveRtDown_(const IndexPair &index) | SimpleExtender< PeakType, FeatureType > | [inline, protected] |
| moveRtUp_(const IndexPair &index) | SimpleExtender< PeakType, FeatureType > | [inline, protected] |
| operator=(const SimpleExtender &) | SimpleExtender< PeakType, FeatureType > | [private] |
| OpenMS::FeaFiModule::OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
| param_ | DefaultParamHandler | [protected] |
| priorities_ | SimpleExtender< PeakType, FeatureType > | [protected] |
| priority_threshold_ | SimpleExtender< PeakType, FeatureType > | [protected] |
| ProbabilityType typedef | SimpleExtender< PeakType, FeatureType > | |
| region_ | SimpleExtender< PeakType, FeatureType > | [protected] |
| running_avg_ | SimpleExtender< PeakType, FeatureType > | [protected] |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| SimpleExtender(const MSExperiment< PeakType > *map, FeatureMap< FeatureType > *features, FeatureFinder *ff) | SimpleExtender< PeakType, FeatureType > | [inline] |
| SimpleExtender() | SimpleExtender< PeakType, FeatureType > | [private] |
| SimpleExtender(const SimpleExtender &) | SimpleExtender< PeakType, FeatureType > | [private] |
| SpectrumType typedef | FeaFiModule< PeakType, FeatureType > | |
| subsections_ | DefaultParamHandler | [protected] |
| UNUSED enum value | FeatureFinderDefs | |
| updateMembers_() | SimpleExtender< PeakType, FeatureType > | [inline, protected, virtual] |
| OpenMS::FeaFiModule::updateMembers_() | DefaultParamHandler | [protected, virtual] |
| USED enum value | FeatureFinderDefs | |
| warn_empty_defaults_ | DefaultParamHandler | [protected] |
| writeDebugFile_(const std::vector< IndexPair > &peaks, UInt nr_feat) | SimpleExtender< PeakType, FeatureType > | [inline, protected] |
| ~DefaultParamHandler() | DefaultParamHandler | [virtual] |
| ~FeaFiModule() | FeaFiModule< PeakType, FeatureType > | [inline, virtual] |
| ~SimpleExtender() | SimpleExtender< PeakType, FeatureType > | [inline, virtual] |