An implementation of the OpenSWATH Spectrum Access interface using Disk caching. More...
#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSCached.h>
Public Types | |
| typedef OpenMS::MSExperiment < Peak1D > | MSExperimentType |
| typedef OpenMS::MSSpectrum < Peak1D > | MSSpectrumType |
Public Member Functions | |
| SpectrumAccessOpenMSCached (String filename) | |
| ~SpectrumAccessOpenMSCached () | |
| OpenSwath::SpectrumPtr | getSpectrumById (int id) const |
| Return a pointer to a spectrum at the given id. | |
| OpenSwath::SpectrumMeta | getSpectrumMetaById (int id) const |
| Returns the meta information for a spectrum. | |
| std::vector< std::size_t > | getSpectraByRT (double RT, double deltaRT) const |
| Return a vector of ids of spectra that are within RT +/- deltaRT. | |
| size_t | getNrSpectra () const |
| Returns the number of spectra available. | |
| SpectrumSettings | getSpectraMetaInfo (int id) const |
| OpenSwath::ChromatogramPtr | getChromatogramById (int id) const |
| Return a pointer to a chromatogram at the given id. | |
| size_t | getNrChromatograms () const |
| Returns the number of chromatograms available. | |
| ChromatogramSettings | getChromatogramMetaInfo (int id) const |
| std::string | getChromatogramNativeID (int id) const |
| Returns the native id of the chromatogram at the given id. | |
Private Attributes | |
| MSExperimentType | meta_ms_experiment_ |
| std::ifstream | ifs_ |
| CachedmzML | cache_ |
| String | filename_ |
| String | filename_cached_ |
Detailed Description
An implementation of the OpenSWATH Spectrum Access interface using Disk caching.
This class implements the OpenSWATH Spectrum Access interface (ISpectrumAccess) using the CachedmzML class which is able to read and write a cached mzML file.
Member Typedef Documentation
| typedef OpenMS::MSExperiment<Peak1D> MSExperimentType |
| typedef OpenMS::MSSpectrum<Peak1D> MSSpectrumType |
Constructor & Destructor Documentation
| SpectrumAccessOpenMSCached | ( | String | filename | ) | [explicit] |
Member Function Documentation
| OpenSwath::ChromatogramPtr getChromatogramById | ( | int | id | ) | const [virtual] |
Return a pointer to a chromatogram at the given id.
Implements ISpectrumAccess.
| ChromatogramSettings getChromatogramMetaInfo | ( | int | id | ) | const |
| std::string getChromatogramNativeID | ( | int | id | ) | const [virtual] |
Returns the native id of the chromatogram at the given id.
Implements ISpectrumAccess.
| size_t getNrChromatograms | ( | ) | const [virtual] |
Returns the number of chromatograms available.
Implements ISpectrumAccess.
| size_t getNrSpectra | ( | ) | const [virtual] |
Returns the number of spectra available.
Implements ISpectrumAccess.
Return a vector of ids of spectra that are within RT +/- deltaRT.
Implements ISpectrumAccess.
| SpectrumSettings getSpectraMetaInfo | ( | int | id | ) | const |
| OpenSwath::SpectrumPtr getSpectrumById | ( | int | id | ) | const [virtual] |
Return a pointer to a spectrum at the given id.
Implements ISpectrumAccess.
| OpenSwath::SpectrumMeta getSpectrumMetaById | ( | int | id | ) | const [virtual] |
Returns the meta information for a spectrum.
Implements ISpectrumAccess.
Member Data Documentation
CachedmzML cache_ [private] |
String filename_cached_ [private] |
std::ifstream ifs_ [private] |
MSExperimentType meta_ms_experiment_ [private] |
| OpenMS / TOPP release 1.10.0 | Documentation generated on Thu Mar 7 2013 09:42:50 using doxygen 1.7.1 |