SuffixArrayPeptideFinder Member List

This is the complete list of members for SuffixArrayPeptideFinder, including all inherited members.

AVERAGE enum value	WeightWrapper
big_string_	SuffixArrayPeptideFinder	[protected]
FASTAEntry typedef	SuffixArrayPeptideFinder
getCandidates(std::vector< std::vector< std::pair< FASTAEntry, String > > > &candidates, const std::vector< DoubleReal > &spec)	SuffixArrayPeptideFinder
getCandidates(std::vector< std::vector< std::pair< FASTAEntry, String > > > &candidates, const String &DTA_file)	SuffixArrayPeptideFinder
getModificationOutputMethod()	SuffixArrayPeptideFinder
getNumberOfModifications() const	SuffixArrayPeptideFinder
getTags()	SuffixArrayPeptideFinder
getTolerance() const	SuffixArrayPeptideFinder
getUseTags()	SuffixArrayPeptideFinder
getWeight(const AASequence &aa) const	WeightWrapper
getWeight(const EmpiricalFormula &ef) const	WeightWrapper
getWeight(const Residue &r, Residue::ResidueType res_type=Residue::Full) const	WeightWrapper
getWeightMode() const	WeightWrapper
modification_output_method_	SuffixArrayPeptideFinder	[protected]
MONO enum value	WeightWrapper
sa_	SuffixArrayPeptideFinder	[protected]
setModificationOutputMethod(const String &s)	SuffixArrayPeptideFinder
setNumberOfModifications(Size number_of_mods) const	SuffixArrayPeptideFinder
setTags(const std::vector< String > &tags)	SuffixArrayPeptideFinder
setTolerance(const DoubleReal t)	SuffixArrayPeptideFinder
setUseTags(bool use_tags)	SuffixArrayPeptideFinder
setWeightMode(const WEIGHTMODE mode)	WeightWrapper
SIZE_OF_WEIGHTMODE enum value	WeightWrapper
SuffixArrayPeptideFinder(const String &filename, const String &method, const WeightWrapper::WEIGHTMODE weight_mode=WeightWrapper::MONO)	SuffixArrayPeptideFinder
SuffixArrayPeptideFinder(const SuffixArrayPeptideFinder &source)	SuffixArrayPeptideFinder
vToString_(std::vector< String > v)	SuffixArrayPeptideFinder	[protected]
WEIGHTMODE enum name	WeightWrapper
WeightWrapper()	WeightWrapper
WeightWrapper(const WEIGHTMODE weight_mode)	WeightWrapper
WeightWrapper(const WeightWrapper &source)	WeightWrapper
~SuffixArrayPeptideFinder()	SuffixArrayPeptideFinder	[virtual]
~WeightWrapper()	WeightWrapper	[virtual]