, including all inherited members.
| aa_to_index_ | SvmTheoreticalSpectrumGenerator | [protected, static] |
| basicity_ | SvmTheoreticalSpectrumGenerator | [protected, static] |
| check_defaults_ | DefaultParamHandler | [protected] |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | [protected] |
| defaultsToParam_() | DefaultParamHandler | [protected] |
| error_name_ | DefaultParamHandler | [protected] |
| generateDescriptorSet_(AASequence peptide, Size position, IonType type, Size precursor_charge, DescriptorSet &desc_set) | SvmTheoreticalSpectrumGenerator | [protected] |
| getDefaults() const | DefaultParamHandler | |
| getIonTypes() | SvmTheoreticalSpectrumGenerator | [inline] |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| helicity_ | SvmTheoreticalSpectrumGenerator | [protected, static] |
| hide_type_ | SvmTheoreticalSpectrumGenerator | [protected] |
| hydrophobicity_ | SvmTheoreticalSpectrumGenerator | [protected, static] |
| initializedMaps_ | SvmTheoreticalSpectrumGenerator | [protected, static] |
| initializeMaps_() | SvmTheoreticalSpectrumGenerator | [protected, static] |
| IntensityMap typedef | SvmTheoreticalSpectrumGenerator | [protected] |
| load() | SvmTheoreticalSpectrumGenerator | |
| mp_ | SvmTheoreticalSpectrumGenerator | [protected] |
| operator=(const SvmTheoreticalSpectrumGenerator &tsg) | SvmTheoreticalSpectrumGenerator | |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
| param_ | DefaultParamHandler | [protected] |
| precursor_charge_ | SvmTheoreticalSpectrumGenerator | [protected] |
| ResidueTypeToString_(Residue::ResidueType type) | SvmTheoreticalSpectrumGenerator | [protected] |
| scaleDescriptorSet_(DescriptorSet &desc, double lower, double upper) | SvmTheoreticalSpectrumGenerator | [protected] |
| scaleSingleFeature_(double &value, double feature_min, double feature_max, double lower=-1.0, double upper=1.0) | SvmTheoreticalSpectrumGenerator | [inline, protected] |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| simulate(RichPeakSpectrum &spectrum, const AASequence &peptide, const gsl_rng *rng, Size precursor_charge) | SvmTheoreticalSpectrumGenerator | |
| subsections_ | DefaultParamHandler | [protected] |
| SvmTheoreticalSpectrumGenerator() | SvmTheoreticalSpectrumGenerator | |
| SvmTheoreticalSpectrumGenerator(const SvmTheoreticalSpectrumGenerator &source) | SvmTheoreticalSpectrumGenerator | |
| SvmTheoreticalSpectrumGeneratorTrainer class | SvmTheoreticalSpectrumGenerator | [friend] |
| updateMembers_() | SvmTheoreticalSpectrumGenerator | [protected, virtual] |
| warn_empty_defaults_ | DefaultParamHandler | [protected] |
| ~DefaultParamHandler() | DefaultParamHandler | [virtual] |
| ~SvmTheoreticalSpectrumGenerator() | SvmTheoreticalSpectrumGenerator | [virtual] |