SvmTheoreticalSpectrumGeneratorSet Class Reference [Chemistry]

Loads SvmTheoreticalSpectrumGenerator instances for different charges. More...

#include <OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.h>

List of all members.

Public Member Functions
SvmTheoreticalSpectrumGeneratorSet &	operator= (const SvmTheoreticalSpectrumGeneratorSet &tsg)
	Assignment operator.
void	simulate (RichPeakSpectrum &spectrum, const AASequence &peptide, const gsl_rng *rng, Size precursor_charge)
	Generate the MS/MS according to the model for the given precursor_charge.
void	load (String)
	Load a trained Svm and Prob. models.
void	getSupportedCharges (std::set< Size > &charges)
	Return precursor charges for which a model is contained in the set.
SvmTheoreticalSpectrumGenerator &	getSvmModel (Size)
	return a modifiable reference to the SVM model with given charge. If charge is not supported throw exception
Constructors and Destructors
	SvmTheoreticalSpectrumGeneratorSet ()
	Default constructor.
	SvmTheoreticalSpectrumGeneratorSet (const SvmTheoreticalSpectrumGeneratorSet &source)
	Copy constructor.
virtual	~SvmTheoreticalSpectrumGeneratorSet ()
	Destructor.
Protected Attributes
std::map< Size, SvmTheoreticalSpectrumGenerator >	simulators_

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Detailed Description

Loads SvmTheoreticalSpectrumGenerator instances for different charges.

The input file contains pairs of charge and svm models separated by a ":" (see share/OpenMS/examples/simulation/SvmModelSet.model)

Actually only a test model is shipped with OpenMS.
Please find trained models at: http://sourceforge.net/projects/open-ms/files/Supplementary/Simulation/.

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Constructor & Destructor Documentation

SvmTheoreticalSpectrumGeneratorSet

(

)

Default constructor.

SvmTheoreticalSpectrumGeneratorSet

(

const SvmTheoreticalSpectrumGeneratorSet &

source

)

Copy constructor.

virtual ~SvmTheoreticalSpectrumGeneratorSet

(

)

[virtual]

Destructor.

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Member Function Documentation

void getSupportedCharges

(

std::set< Size > &

charges

)

Return precursor charges for which a model is contained in the set.

SvmTheoreticalSpectrumGenerator& getSvmModel

(

Size

)

return a modifiable reference to the SVM model with given charge. If charge is not supported throw exception

void load

(

String

)

Load a trained Svm and Prob. models.

SvmTheoreticalSpectrumGeneratorSet& operator=

(

const SvmTheoreticalSpectrumGeneratorSet &

tsg

)

Assignment operator.

void simulate	(	RichPeakSpectrum &	spectrum,
		const AASequence &	peptide,
		const gsl_rng *	rng,
		Size	precursor_charge
	)

Generate the MS/MS according to the model for the given precursor_charge.

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Member Data Documentation

std::map<Size, SvmTheoreticalSpectrumGenerator> simulators_ [protected]