, including all inherited members.
| check_defaults_ | DefaultParamHandler | [protected] |
| countIntensities_(const PeakSpectrum &spectrum, const AASequence &annotation, IonType type, std::map< std::pair< IonType, Size >, std::vector< DoubleReal > > &observed_intensities, DoubleReal tolerance, Size number_of_regions) | SvmTheoreticalSpectrumGeneratorTrainer | [private] |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | [protected] |
| defaultsToParam_() | DefaultParamHandler | [protected] |
| DescriptorSet typedef | SvmTheoreticalSpectrumGeneratorTrainer | [private] |
| error_name_ | DefaultParamHandler | [protected] |
| getDefaults() const | DefaultParamHandler | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| IonType typedef | SvmTheoreticalSpectrumGeneratorTrainer | [private] |
| normalizeIntensity(PeakSpectrum &S) const | SvmTheoreticalSpectrumGeneratorTrainer | |
| ObservedIntensMap typedef | SvmTheoreticalSpectrumGeneratorTrainer | [private] |
| operator=(const SvmTheoreticalSpectrumGeneratorTrainer &tsg) | SvmTheoreticalSpectrumGeneratorTrainer | |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
| param_ | DefaultParamHandler | [protected] |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| subsections_ | DefaultParamHandler | [protected] |
| SvmTheoreticalSpectrumGeneratorTrainer() | SvmTheoreticalSpectrumGeneratorTrainer | |
| SvmTheoreticalSpectrumGeneratorTrainer(const SvmTheoreticalSpectrumGeneratorTrainer &source) | SvmTheoreticalSpectrumGeneratorTrainer | |
| trainModel(const PeakMap &spectra, const std::vector< AASequence > &annotations, String filename, Int precursor_charge) | SvmTheoreticalSpectrumGeneratorTrainer | |
| trainSecondaryTypes_(TextFile &info_outfile, Size number_of_regions, Size number_of_intensity_levels, ObservedIntensMap &observed_intensities, const std::vector< IonType > &ion_types, const std::vector< bool > &is_primary) | SvmTheoreticalSpectrumGeneratorTrainer | [private] |
| updateMembers_() | DefaultParamHandler | [protected, virtual] |
| warn_empty_defaults_ | DefaultParamHandler | [protected] |
| writeTrainingFile_(std::vector< DescriptorSet > &training_input, std::vector< DoubleReal > &training_output, String filename) | SvmTheoreticalSpectrumGeneratorTrainer | [protected] |
| ~DefaultParamHandler() | DefaultParamHandler | [virtual] |
| ~SvmTheoreticalSpectrumGeneratorTrainer() | SvmTheoreticalSpectrumGeneratorTrainer | [virtual] |