This is the complete list of members for
TOFCalibration, including all inherited members.
| a_ | TOFCalibration | [private] |
| acc_ | TOFCalibration | [private] |
| applyTOFConversion_(MSExperiment<> &calib_spectra) | TOFCalibration | [private] |
| averageCoefficients_() | TOFCalibration | [private] |
| averageErrors_() | TOFCalibration | [private] |
| b_ | TOFCalibration | [private] |
| begin_ | ProgressLogger | [mutable, protected] |
| c_ | TOFCalibration | [private] |
| calculateCalibCoeffs_(MSExperiment<> &calib_peaks_ft) | TOFCalibration | [private] |
| calib_masses_ | TOFCalibration | [private] |
| calib_peaks_ft_ | TOFCalibration | [private] |
| calibrate(MSExperiment< Peak1D > &calib_spectra, MSExperiment< PeakType > &exp, std::vector< double > &exp_masses) | TOFCalibration | |
| check_defaults_ | DefaultParamHandler | [protected] |
| CMD enum value | ProgressLogger | |
| coeff_quad_fit_ | TOFCalibration | [private] |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | [protected] |
| defaultsToParam_() | DefaultParamHandler | [protected] |
| dlg_ | ProgressLogger | [mutable, protected] |
| end_ | ProgressLogger | [mutable, protected] |
| endProgress() const | ProgressLogger | |
| error_medians_ | TOFCalibration | [private] |
| error_name_ | DefaultParamHandler | [protected] |
| errors_ | TOFCalibration | [private] |
| exp_masses_ | TOFCalibration | [private] |
| getDefaults() const | DefaultParamHandler | |
| getLogType() const | ProgressLogger | |
| getML1s() const | TOFCalibration | [inline] |
| getML2s() const | TOFCalibration | [inline] |
| getML3s() const | TOFCalibration | [inline] |
| getMonoisotopicPeaks_(MSExperiment<> &calib_peaks, std::vector< std::vector< unsigned int > > &monoiso_peaks) | TOFCalibration | [private] |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| GUI enum value | ProgressLogger | |
| last_invoke_ | ProgressLogger | [mutable, protected] |
| LogType enum name | ProgressLogger | |
| matchMasses_(MSExperiment<> &calib_peaks, std::vector< std::vector< unsigned int > > &monoiso_peaks, std::vector< unsigned int > &obs_masses, std::vector< double > &exp_masses, unsigned int idx) | TOFCalibration | [private] |
| ml1s_ | TOFCalibration | [private] |
| ml2s_ | TOFCalibration | [private] |
| ml3s_ | TOFCalibration | [private] |
| mQ_(double ft, unsigned int spec) | TOFCalibration | [inline, private] |
| mQAv_(double ft) | TOFCalibration | [inline, private] |
| NONE enum value | ProgressLogger | |
| operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
| param_ | DefaultParamHandler | [protected] |
| pickAndCalibrate(MSExperiment< Peak1D > &calib_spectra, MSExperiment< PeakType > &exp, std::vector< double > &exp_masses) | TOFCalibration | |
| ProgressLogger() | ProgressLogger | |
| recursion_depth_ | ProgressLogger | [protected, static] |
| setLogType(LogType type) const | ProgressLogger | |
| setML1s(const std::vector< double > &ml1s) | TOFCalibration | [inline] |
| setML2s(const std::vector< double > &ml2s) | TOFCalibration | [inline] |
| setML3s(const std::vector< double > &ml3s) | TOFCalibration | [inline] |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setProgress(SignedSize value) const | ProgressLogger | |
| spline_ | TOFCalibration | [private] |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| stop_watch_ | ProgressLogger | [mutable, protected] |
| subsections_ | DefaultParamHandler | [protected] |
| TOFCalibration() | TOFCalibration | |
| type_ | ProgressLogger | [mutable, protected] |
| updateMembers_() | DefaultParamHandler | [protected, virtual] |
| value_ | ProgressLogger | [mutable, protected] |
| warn_empty_defaults_ | DefaultParamHandler | [protected] |
| ~DefaultParamHandler() | DefaultParamHandler | [virtual] |
| ~ProgressLogger() | ProgressLogger | |
| ~TOFCalibration() | TOFCalibration | |