, including all inherited members.
| check_defaults_ | DefaultParamHandler | [protected] |
| curr_region_ | TwoDOptimization | [protected] |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | [protected] |
| defaultsToParam_() | DefaultParamHandler | [protected] |
| eps_abs_ | TwoDOptimization | [protected] |
| eps_rel_ | TwoDOptimization | [protected] |
| error_name_ | DefaultParamHandler | [protected] |
| evaluate2D_(const gsl_vector *x, void *params, gsl_vector *f, gsl_matrix *J) | TwoDOptimization | [protected, static] |
| findMatchingPeaks_(std::multimap< DoubleReal, IsotopeCluster >::iterator &it, MSExperiment<> &ms_exp) | TwoDOptimization | [protected] |
| getDefaults() const | DefaultParamHandler | |
| getMaxAbsError() const | TwoDOptimization | [inline] |
| getMaxIterations() const | TwoDOptimization | [inline] |
| getMaxPeakDistance() const | TwoDOptimization | [inline] |
| getMaxRelError() const | TwoDOptimization | [inline] |
| getMZTolerance() const | TwoDOptimization | [inline] |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getPenalties() const | TwoDOptimization | [inline] |
| getRegionEndpoints_(MSExperiment< OutputPeakType > &exp, InputSpectrumIterator &first, InputSpectrumIterator &last, Size iso_map_idx, DoubleReal noise_level, TwoDOptimization::Data &d) | TwoDOptimization | [protected] |
| getSubsections() const | DefaultParamHandler | |
| iso_map_ | TwoDOptimization | [protected] |
| jacobian2D_(const gsl_vector *x, void *params, gsl_matrix *J) | TwoDOptimization | [protected, static] |
| matching_peaks_ | TwoDOptimization | [protected] |
| max_iteration_ | TwoDOptimization | [protected] |
| max_peak_distance_ | TwoDOptimization | [protected] |
| operator=(const TwoDOptimization &opt) | TwoDOptimization | |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | [virtual] |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | [virtual] |
| optimize(InputSpectrumIterator first, InputSpectrumIterator last, MSExperiment< OutputPeakType > &ms_exp, bool real2D=true) | TwoDOptimization | |
| optimizeRegions_(InputSpectrumIterator &first, InputSpectrumIterator &last, MSExperiment< OutputPeakType > &ms_exp) | TwoDOptimization | [protected] |
| optimizeRegionsScanwise_(InputSpectrumIterator &first, InputSpectrumIterator &last, MSExperiment< OutputPeakType > &ms_exp) | TwoDOptimization | [protected] |
| param_ | DefaultParamHandler | [protected] |
| penalties_ | TwoDOptimization | [protected] |
| real_2D_ | TwoDOptimization | [protected] |
| residual2D_(const gsl_vector *x, void *params, gsl_vector *f) | TwoDOptimization | [protected, static] |
| searchInScan_(std::vector< DoubleReal >::iterator scan_begin, std::vector< DoubleReal >::iterator scan_end, DoubleReal current_mz) | TwoDOptimization | [protected] |
| setMaxAbsError(DoubleReal eps_abs) | TwoDOptimization | [inline] |
| setMaxIterations(UInt max_iteration) | TwoDOptimization | [inline] |
| setMaxPeakDistance(DoubleReal max_peak_distance) | TwoDOptimization | [inline] |
| setMaxRelError(DoubleReal eps_rel) | TwoDOptimization | [inline] |
| setMZTolerance(DoubleReal tolerance_mz) | TwoDOptimization | [inline] |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setPenalties(OptimizationFunctions::PenaltyFactorsIntensity &penalties) | TwoDOptimization | [inline] |
| subsections_ | DefaultParamHandler | [protected] |
| tolerance_mz_ | TwoDOptimization | [protected] |
| TwoDOptimization() | TwoDOptimization | |
| TwoDOptimization(const TwoDOptimization &opt) | TwoDOptimization | |
| updateMembers_() | TwoDOptimization | [protected, virtual] |
| warn_empty_defaults_ | DefaultParamHandler | [protected] |
| ~DefaultParamHandler() | DefaultParamHandler | [virtual] |
| ~TwoDOptimization() | TwoDOptimization | [inline, virtual] |