OpenMS: XTandemXMLFile Class Reference

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Used to load XTandemXML files. More...

#include <OpenMS/FORMAT/XTandemXMLFile.h>

Inheritance diagram for XTandemXMLFile:

List of all members.

Public Member Functions
	XTandemXMLFile ()
	Default constructor.
virtual	~XTandemXMLFile ()
	Destructor.
void	load (const String &filename, ProteinIdentification &protein_identification, std::vector< PeptideIdentification > &id_data)
	loads data from a XTandemXML file
void	setModificationDefinitionsSet (const ModificationDefinitionsSet &rhs)
	sets the valid modifications
Protected Member Functions
void	startElement (const XMLCh const , const XMLCh const , const XMLCh *const qname, const xercesc::Attributes &attributes)
void	endElement (const XMLCh const , const XMLCh const , const XMLCh *const qname)
void	characters (const XMLCh *const chars, const XMLSize_t)
	XTandemXMLFile (const XTandemXMLFile &rhs)
XTandemXMLFile &	operator= (const XTandemXMLFile &rhs)
Private Attributes
ProteinIdentification *	protein_identification_
bool	protein_open_
bool	is_description_
Map< UInt, std::vector < PeptideHit > >	peptide_hits_
Map< String, ProteinHit >	protein_hits_
String	actual_protein_id_
Int	actual_charge_
Int	actual_id_
String	tag_
UInt	actual_start_
UInt	actual_stop_
ModificationDefinitionsSet	mod_def_set_

Detailed Description

Used to load XTandemXML files.

This class is used to load documents that implement the schema of XTandemXML files.

Constructor & Destructor Documentation

XTandemXMLFile ( )

Default constructor.

virtual ~XTandemXMLFile ( ) [virtual]

Destructor.

XTandemXMLFile ( const XTandemXMLFile & rhs ) [protected]

Member Function Documentation

void characters	(	const XMLCh *const	chars,
		const	XMLSize_t
	)			`[protected]`

void endElement	(	const XMLCh *	const,
		const XMLCh *	const,
		const XMLCh *const	qname
	)			`[protected]`

XTandemXMLFile& operator= ( const XTandemXMLFile & rhs ) [protected]

void setModificationDefinitionsSet ( const ModificationDefinitionsSet & rhs )

sets the valid modifications

void startElement	(	const XMLCh *	const,
		const XMLCh *	const,
		const XMLCh *const	qname,
		const xercesc::Attributes &	attributes
	)			`[protected]`

Member Data Documentation

Int actual_charge_ [private]

Int actual_id_ [private]

String actual_protein_id_ [private]

UInt actual_start_ [private]

UInt actual_stop_ [private]

bool is_description_ [private]

ModificationDefinitionsSet mod_def_set_ [private]

Map<UInt, std::vector<PeptideHit> > peptide_hits_ [private]

Map<String, ProteinHit> protein_hits_ [private]

ProteinIdentification* protein_identification_ [private]

bool protein_open_ [private]

String tag_ [private]

OpenMS / TOPP release 1.10.0

Documentation generated on Thu Mar 7 2013 09:42:54 using doxygen 1.7.1