TOPPRNPxl Member List

This is the complete list of members for TOPPRNPxl, including all inherited members.

addDataProcessing_(ConsensusMap &map, const DataProcessing &dp) const	TOPPBase	[protected]
addDataProcessing_(FeatureMap< FeatureType > &map, const DataProcessing &dp) const	TOPPBase	[inline, protected]
addDataProcessing_(MSExperiment< PeakType, CT > &map, const DataProcessing &dp) const	TOPPBase	[inline, protected]
addEmptyLine_()	TOPPBase	[protected]
breakString_(const String &input, const Size line_len, const Size indentation, const Size max_lines) const	TOPPBase	[protected]
CANNOT_WRITE_OUTPUT_FILE enum value	TOPPBase
checkIfIniParametersAreApplicable_(const Param &ini_params)	TOPPBase	[protected]
checkParam_(const Param &param, const String &filename, const String &location) const	TOPPBase	[protected]
console_width_	TOPPBase	[protected]
debug_level_	TOPPBase	[protected]
EXECUTION_OK enum value	TOPPBase
ExitCodes enum name	TOPPBase
EXTERNAL_PROGRAM_ERROR enum value	TOPPBase
findEntry_(const String &name) const	TOPPBase	[protected]
getDocumentIDTagger_() const	TOPPBase	[protected]
getDoubleList_(const String &name) const	TOPPBase	[protected]
getDoubleOption_(const String &name) const	TOPPBase	[protected]
getFlag_(const String &name) const	TOPPBase	[protected]
getIniLocation_() const	TOPPBase	[inline, protected]
getIntList_(const String &name) const	TOPPBase	[protected]
getIntOption_(const String &name) const	TOPPBase	[protected]
getParam_() const	TOPPBase	[protected]
getProcessingInfo_(DataProcessing::ProcessingAction action) const	TOPPBase	[protected]
getProcessingInfo_(const std::set< DataProcessing::ProcessingAction > &actions) const	TOPPBase	[protected]
getStringList_(const String &name) const	TOPPBase	[protected]
getStringOption_(const String &name) const	TOPPBase	[protected]
ILLEGAL_PARAMETERS enum value	TOPPBase
INCOMPATIBLE_INPUT_DATA enum value	TOPPBase
INPUT_FILE_CORRUPT enum value	TOPPBase
INPUT_FILE_EMPTY enum value	TOPPBase
INPUT_FILE_NOT_FOUND enum value	TOPPBase
INPUT_FILE_NOT_READABLE enum value	TOPPBase
inputFileReadable_(const String &filename, const String &param_name) const	TOPPBase	[protected]
INTERNAL_ERROR enum value	TOPPBase
log_type_	TOPPBase	[protected]
main(int argc, const char **argv)	TOPPBase
main_(int, const char **)	TOPPRNPxl	[inline, protected, virtual]
MISSING_PARAMETERS enum value	TOPPBase
official_	TOPPBase	[protected]
outputFileWritable_(const String &filename, const String &param_name) const	TOPPBase	[protected]
PARSE_ERROR enum value	TOPPBase
parseRange_(const String &text, double &low, double &high) const	TOPPBase	[protected]
parseRange_(const String &text, Int &low, Int &high) const	TOPPBase	[protected]
printUsage_()	TOPPBase	[protected]
readConsoleSize_()	TOPPBase	[protected]
registerDoubleList_(const String &name, const String &argument, DoubleList default_value, const String &description, bool required=true, bool advanced=false)	TOPPBase	[protected]
registerDoubleOption_(const String &name, const String &argument, double default_value, const String &description, bool required=true, bool advanced=false)	TOPPBase	[protected]
registerFlag_(const String &name, const String &description, bool advanced=false)	TOPPBase	[protected]
registerFullParam_(const Param &param)	TOPPBase	[protected]
registerInputFile_(const String &name, const String &argument, const String &default_value, const String &description, bool required=true, bool advanced=false, const StringList &tags=StringList())	TOPPBase	[protected]
registerInputFileList_(const String &name, const String &argument, StringList default_value, const String &description, bool required=true, bool advanced=false)	TOPPBase	[protected]
registerIntList_(const String &name, const String &argument, IntList default_value, const String &description, bool required=true, bool advanced=false)	TOPPBase	[protected]
registerIntOption_(const String &name, const String &argument, Int default_value, const String &description, bool required=true, bool advanced=false)	TOPPBase	[protected]
registerOptionsAndFlags_()	TOPPRNPxl	[inline, protected, virtual]
registerOutputFile_(const String &name, const String &argument, const String &default_value, const String &description, bool required=true, bool advanced=false)	TOPPBase	[protected]
registerOutputFileList_(const String &name, const String &argument, StringList default_value, const String &description, bool required=true, bool advanced=false)	TOPPBase	[protected]
registerParamEntry_(const Param::ParamEntry &entry, const String &argument="", const String &full_name="")	TOPPBase	[protected]
registerStringList_(const String &name, const String &argument, StringList default_value, const String &description, bool required=true, bool advanced=false)	TOPPBase	[protected]
registerStringOption_(const String &name, const String &argument, const String &default_value, const String &description, bool required=true, bool advanced=false)	TOPPBase	[protected]
registerSubsection_(const String &name, const String &description)	TOPPBase	[protected]
registerTOPPSubsection_(const String &name, const String &description)	TOPPBase	[protected]
setMaxFloat_(const String &name, DoubleReal max)	TOPPBase	[protected]
setMaxInt_(const String &name, Int max)	TOPPBase	[protected]
setMaxNumberOfThreads(int num_threads)	TOPPBase	[static]
setMinFloat_(const String &name, DoubleReal min)	TOPPBase	[protected]
setMinInt_(const String &name, Int min)	TOPPBase	[protected]
setValidFormats_(const String &name, const std::vector< String > &formats, const bool force_OpenMS_format=true)	TOPPBase	[protected]
setValidStrings_(const String &name, const std::vector< String > &strings)	TOPPBase	[protected]
test_mode_	TOPPBase	[protected]
toolName_() const	TOPPBase	[protected]
topp_ini_file_	TOPPBase	[protected, static]
TOPPBase(const String &name, const String &description, bool official=true, bool id_tag_support=false, bool require_args=true, const String &version="")	TOPPBase
TOPPRNPxl()	TOPPRNPxl	[inline]
UNEXPECTED_RESULT enum value	TOPPBase
UNKNOWN_ERROR enum value	TOPPBase
verboseVersion_	TOPPBase	[protected]
version_	TOPPBase	[protected]
writeCTD_()	TOPPBase	[protected]
writeDebug_(const String &text, UInt min_level) const	TOPPBase	[protected]
writeDebug_(const String &text, const Param &param, UInt min_level) const	TOPPBase	[protected]
writeLog_(const String &text) const	TOPPBase	[protected]
writeWSDL_(const String &filename)	TOPPBase	[protected]
~TOPPBase()	TOPPBase	[virtual]