Public Member Functions | |
| TOPPRNPxl () | |
Protected Member Functions | |
| void | registerOptionsAndFlags_ () |
| Sets the valid command line options (with argument) and flags (without argument). | |
| ExitCodes | main_ (int, const char **) |
| The actual "main" method. main_() is invoked by main(). | |
Constructor & Destructor Documentation
| TOPPRNPxl | ( | ) | [inline] |
Member Function Documentation
| ExitCodes main_ | ( | int | argc, | |
| const char ** | argv | |||
| ) | [inline, protected, virtual] |
The actual "main" method. main_() is invoked by main().
Implements TOPPBase.
References PeptideIdentification::assignRanks(), MarkerIonExtractor::extractMarkerIons(), PeptideIdentification::getHits(), MSSpectrum< PeakT >::getRT(), String::has(), initModificationMassesRNA(), OpenMS::Constants::k, ModificationMassesResult::mod_combinations, ModificationMassesResult::mod_formula_idx, ModificationMassesResult::mod_masses, OpenMS::Constants::PROTON_MASS_U, RT_FACTOR, RT_FACTOR_PRECISION, Precursor::setCharge(), SpectrumSettings::setComment(), PeptideIdentification::setHigherScoreBetter(), PeptideIdentification::setHits(), MetaInfoInterface::setMetaValue(), Peak1D::setMZ(), MSSpectrum< PeakT >::setName(), SpectrumSettings::setPrecursors(), MSSpectrum< PeakT >::setRT(), String::substitute(), String::toQString(), and DataValue::valueType().
| void registerOptionsAndFlags_ | ( | ) | [inline, protected, virtual] |
Sets the valid command line options (with argument) and flags (without argument).
The options '-ini' '-log' '-instance' '-debug' and the flag '--help' are automatically registered.
Implements TOPPBase.
| OpenMS / TOPP release 1.10.0 | Documentation generated on Thu Mar 7 2013 09:42:49 using doxygen 1.7.1 |