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TOPPRNPxlXICFilter Class Reference

Inheritance diagram for TOPPRNPxlXICFilter:
TOPPBase

List of all members.

Public Member Functions

 TOPPRNPxlXICFilter ()

Protected Member Functions

void registerOptionsAndFlags_ ()
 Sets the valid command line options (with argument) and flags (without argument).
void filterByFoldChange (const MSExperiment<> &exp1, const MSExperiment<> &exp2, const vector< DoubleReal > &pc_ms2_rts, const vector< DoubleReal > &pc_mzs, const DoubleReal rttol, const DoubleReal mztol, DoubleReal fold_change, vector< DoubleReal > &control_XIC_larger, vector< DoubleReal > &treatment_XIC_larger, vector< DoubleReal > &indifferent_XICs)
ExitCodes main_ (int, const char **)
 The actual "main" method. main_() is invoked by main().

Constructor & Destructor Documentation

TOPPRNPxlXICFilter (  )  [inline]

Member Function Documentation

void filterByFoldChange ( const MSExperiment<> &  exp1,
const MSExperiment<> &  exp2,
const vector< DoubleReal > &  pc_ms2_rts,
const vector< DoubleReal > &  pc_mzs,
const DoubleReal  rttol,
const DoubleReal  mztol,
DoubleReal  fold_change,
vector< DoubleReal > &  control_XIC_larger,
vector< DoubleReal > &  treatment_XIC_larger,
vector< DoubleReal > &  indifferent_XICs 
) [inline, protected]

References MSExperiment< PeakT, ChromatogramPeakT >::areaBeginConst(), MSExperiment< PeakT, ChromatogramPeakT >::areaEndConst(), AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >::getRT(), and OpenMS::Internal::ClassTest::ratio.

ExitCodes main_ ( int  argc,
const char **  argv 
) [inline, protected, virtual]

The actual "main" method. main_() is invoked by main().

Implements TOPPBase.

References MSExperiment< PeakT, ChromatogramPeakT >::clear(), MzMLFile::load(), and MzMLFile::store().

void registerOptionsAndFlags_ (  )  [inline, protected, virtual]

Sets the valid command line options (with argument) and flags (without argument).

The options '-ini' '-log' '-instance' '-debug' and the flag '--help' are automatically registered.

Implements TOPPBase.

OpenMS / TOPP release 1.10.0 Documentation generated on Thu Mar 7 2013 09:42:49 using doxygen 1.7.1