File List

Here is a list of all files with brief descriptions:

AAIndex.h [code]
AASequence.h [code]
Acquisition.h [code]
AcquisitionInfo.h [code]
AcquisitionInfoVisualizer.h [code]
AcquisitionVisualizer.h [code]
AcqusHandler.h [code]
AdditiveSeries.C
Adduct.h [code]
Annotation1DDistanceItem.h [code]
Annotation1DItem.h [code]
Annotation1DPeakItem.h [code]
Annotation1DTextItem.h [code]
Annotations1DContainer.h [code]
AreaIterator.h [code]
AScore.h [code]
AsymmetricStatistics.h [code]
AverageLinkage.h [code]
AveragePosition.h [code]
AxisPainter.h [code]
AxisTickCalculator.h [code]
AxisWidget.h [code]
BackgroundControl.h [code]
BackgroundIntensityBin.h [code]
Base64.h [code]
BaseFeature.h [code]
BaseGroupFinder.h [code]
BaseLabeler.h [code]
BaseLabeler_impl.h [code]
BaselineFilter.C
BaseModel.h [code]
BaseModel_impl.h [code]
BaseSuperimposer.h [code]
BaseVisualizer.h [code]
BaseVisualizerGUI.h [code]
BasicStatistics.h [code]
BernNorm.h [code]
BiGaussFitter1D.h [code]
BiGaussModel.h [code]
BigString.h [code]
BilinearInterpolation.h [code]
BinaryComposeFunctionAdapter.h [code]
BinaryTreeNode.h [code]
BinnedSharedPeakCount.h [code]
BinnedSpectralContrastAngle.h [code]
BinnedSpectrum.h [code]
BinnedSpectrumCompareFunctor.h [code]
BinnedSumAgreeingIntensities.h [code]
Bzip2Ifstream.h [code]
Bzip2InputStream.h [code]
CachedmzML.h [code]
CentroidData.h [code]
CentroidPeak.h [code]
Changelog.doxygen
ChargePair.h [code]
ChromatogramExtractor.h [code]
ChromatogramPeak.h [code]
ChromatogramSettings.h [code]
ChromatogramTools.h [code]
ClassTest.h [code]
ClusterAnalyzer.h [code]
ClusteredMS2ConsensusSpectrum.h [code]
ClusterFunctor.h [code]
ClusterHierarchical.h [code]
CodingConvention.doxygen
ColorSelector.h [code]
ComparatorUtils.h [code]
CompareFouriertransform.h [code]
ComplementFilter.h [code]
ComplementMarker.h [code]
CompleteLinkage.h [code]
CompNovo.C
CompNovoCID.C
CompNovoIdentification.h [code]
CompNovoIdentificationBase.h [code]
CompNovoIdentificationCID.h [code]
CompNovoIonScoring.h [code]
CompNovoIonScoringBase.h [code]
CompNovoIonScoringCID.h [code]
Compomer.h [code]
CompressedInputSource.h [code]
ConsensusFeature.h [code]
ConsensusID.C
ConsensusID.h [code]
ConsensusIsotopePattern.h [code]
ConsensusMap.h [code]
ConsensusMapNormalizer.C
ConsensusMapNormalizerAlgorithmMedian.h [code]
ConsensusMapNormalizerAlgorithmQuantile.h [code]
ConsensusMapNormalizerAlgorithmThreshold.h [code]
ConsensusXMLFile.h [code]
Constants.h [code]
ConstRefVector.h [code]
ContactPerson.h [code]
ContactPersonVisualizer.h [code]
ContinuousWaveletTransform.h [code]
ContinuousWaveletTransformNumIntegration.h [code]
Contributing.doxygen
ControlledVocabulary.h [code]
ConvertTraMLToTSV.C
ConvertTSVToTraML.C
ConvexHull2D.h [code]
CPPGuide.doxygen
CsvFile.h [code]
CVInspector.C
CVMappingFile.h [code]
CVMappingRule.h [code]
CVMappings.h [code]
CVMappingTerm.h [code]
CVReference.h [code]
CVTerm.h [code]
CVTermList.h [code]
DataAccessHelper.h [code]
DataFilterDialog.h [code]
DataFilters.h [code]
DataFrameWriter.h [code]
DataProcessing.h [code]
DataProcessingVisualizer.h [code]
DataStructures.h [code]
DataValue.h [code]
Date.h [code]
DateTime.h [code]
DBAdapter.h [code]
DBConnection.h [code]
DBExporter.C
DBImporter.C
DBOpenDialog.h [code]
DBoundingBox.h [code]
Decharger.C
DecoyDatabase.C
DefaultParamHandler.h [code]
Deisotoper.h [code]
DeMeanderize.C
DeNovoAlgorithm.h [code]
DeNovoIdentification.h [code]
DeNovoIonScoring.h [code]
DeNovoPostScoring.h [code]
DetectabilitySimulation.h [code]
DIAHelper.h [code]
DIAPrescoring.h [code]
DIAScoring.h [code]
Digestion.h [code]
DigestionVisualizer.h [code]
Digestor.C
DigestorMotif.C
DigestSimulation.h [code]
DIntervalBase.h [code]
DistanceMatrix.h [code]
DocumentIdentifier.h [code]
DocumentIdentifierVisualizer.h [code]
DocumentIDTagger.h [code]
DoubleList.h [code]
DPeak.h [code]
DPosition.h [code]
DRange.h [code]
DRichPeak.h [code]
DTA2DFile.h [code]
DTAExtractor.C
DTAFile.h [code]
EDTAFile.h [code]
EdwardsLippertIterator.h [code]
EdwardsLippertIteratorTryptic.h [code]
EGHFitter1D.h [code]
EGHModel.h [code]
EGHTraceFitter.h [code]
EICExtractor.C
Element.h [code]
ElementDB.h [code]
ElutionPeakDetection.h [code]
EmgFitter1D.h [code]
EmgModel.h [code]
EmgScoring.h [code]
EmpiricalFormula.h [code]
EnhancedTabBar.h [code]
EnhancedTabBarWidgetInterface.h [code]
EnhancedWorkspace.h [code]
EnzymaticDigestion.h [code]
ERPairFinder.C
EuclideanSimilarity.h [code]
Exception.h [code]
ExecutePipeline.C
ExperimentalSettings.h [code]
ExperimentalSettingsVisualizer.h [code]
ExtendedIsotopeFitter1D.h [code]
ExtendedIsotopeModel.h [code]
ExternalCode.doxygen
Factory.h [code]
FactoryBase.h [code]
FalseDiscoveryRate.C
FalseDiscoveryRate.h [code]
public/FAQ.doxygen
internal/FAQ.doxygen
FASTAFile.h [code]
FastaIterator.h [code]
FastaIteratorIntern.h [code]
FeaFiModule.h [code]
Feature.h [code]
FeatureDeconvolution.h [code]
FeatureDistance.h [code]
FeatureEditDialog.h [code]
FeatureFileOptions.h [code]
FeatureFinder.h [code]
FeatureFinder_impl.h [code]
FeatureFinderAlgorithm.h [code]
FeatureFinderAlgorithm_impl.h [code]
FeatureFinderAlgorithmIsotopeWavelet.h [code]
FeatureFinderAlgorithmMRM.h [code]
FeatureFinderAlgorithmPicked.h [code]
FeatureFinderAlgorithmPickedHelperStructs.h [code]
FeatureFinderAlgorithmSH.h [code]
FeatureFinderAlgorithmSHCtrl.h [code]
FeatureFinderAlgorithmSimple.h [code]
FeatureFinderAlgorithmSimplest.h [code]
FeatureFinderCentroided.C
FeatureFinderDefs.h [code]
FeatureFinderIsotopeWavelet.C
FeatureFinderMetabo.C
FeatureFinderMRM.C
FeatureFinderRaw.C
FeatureFinderSuperHirn.C
FeatureFindingMetabo.h [code]
FeatureGroupingAlgorithm.h [code]
FeatureGroupingAlgorithmIdentification.h [code]
FeatureGroupingAlgorithmLabeled.h [code]
FeatureGroupingAlgorithmQT.h [code]
FeatureGroupingAlgorithmUnlabeled.h [code]
FeatureHandle.h [code]
FeatureLCProfile.h [code]
FeatureLinkerBase.C
FeatureLinkerLabeled.C
FeatureLinkerUnlabeled.C
FeatureLinkerUnlabeledQT.C
FeatureMap.h [code]
FeatureXMLFile.h [code]
FFEval.C
FidHandler.h [code]
File.h [code]
FileConverter.C
FileFilter.C
FileHandler.h [code]
FileInfo.C
FileMerger.C
FileTypes.h [code]
FileWatcher.h [code]
FilterFunctor.h [code]
Fitter1D.h [code]
FTPeakDetectController.h [code]
FuzzyDiff.C
FuzzyStringComparator.h [code]
GammaDistributionFitter.h [code]
GaussFilter.h [code]
GaussFitter.h [code]
GaussFitter1D.h [code]
GaussModel.h [code]
GaussTraceFitter.h [code]
GenericWrapper.C
GlobalExceptionHandler.h [code]
GoodDiffFilter.h [code]
Gradient.h [code]
GradientVisualizer.h [code]
GridFeature.h [code]
GumbelDistributionFitter.h [code]
GzipIfstream.h [code]
GzipInputStream.h [code]
HashGrid.h [code]
HiddenMarkovModel.h [code]
HierarchicalClustering.h [code]
HighResPrecursorMassCorrector.C
Histogram.h [code]
HistogramDialog.h [code]
HistogramWidget.h [code]
HPLC.h [code]
HPLCVisualizer.h [code]
ICPLLabeler.h [code]
IDConflictResolver.C
IDDecoyProbability.C
IDDecoyProbability.h [code]
Identification.h [code]
IdentificationHit.h [code]
IDEvaluationBase.C
IDEvaluationBase.h [code]
IDEvaluator.C
IDEvaluatorGUI.C
IDExtractor.C
IDFileConverter.C
IDFilter.C
IDFilter.h [code]
IDMapper.C
IDMapper.h [code]
IDMassAccuracy.C
IDMerger.C
IDPosteriorErrorProbability.C
IDRipper.C
IDRipper.h [code]
IDRTCalibration.C
IDSplitter.C
IdXMLFile.h [code]
ILPDCWrapper.h [code]
ImageCreator.C
IMSAlphabet.h [code]
IMSAlphabetParser.h [code]
IMSAlphabetTextParser.h [code]
IMSElement.h [code]
IMSIsotopeDistribution.h [code]
IncludeExcludeTarget.h [code]
InclusionExclusionList.h [code]
InclusionExclusionListCreator.C
INIFileEditor.C
INIFileEditorWindow.C
INIFileEditorWindow.h [code]
INIUpdater.C
INIUpdater.h [code]
InspectAdapter.C
InspectInfile.h [code]
InspectOutfile.h [code]
install-linux-bin.doxygen
install-linux.doxygen
install-macs-bin.doxygen
install-macs.doxygen
install-win-bin.doxygen
install-win.doxygen
Instrument.h [code]
InstrumentSettings.h [code]
InstrumentSettingsVisualizer.h [code]
InstrumentVisualizer.h [code]
IntegerMassDecomposer.h [code]
IntensityBalanceFilter.h [code]
InternalCalibration.C
InternalCalibration.h [code]
InterpolationModel.h [code]
IntList.h [code]
IonDetector.h [code]
IonDetectorVisualizer.h [code]
IonizationSimulation.h [code]
IonSource.h [code]
IonSourceVisualizer.h [code]
IsotopeCluster.h [code]
IsotopeDiffFilter.h [code]
IsotopeDistribution.h [code]
IsotopeDistributionCache.h [code]
IsotopeFitter1D.h [code]
IsotopeMarker.h [code]
IsotopeModel.h [code]
IsotopeWavelet.h [code]
IsotopeWaveletConstants.h [code]
IsotopeWaveletCudaKernel.h [code]
IsotopeWaveletParallelFor.h [code]
IsotopeWaveletTransform.h [code]
IsotopicDist.h [code]
ISpectrumAccess.h [code]
ITransition.h [code]
ITRAQAnalyzer.C
ItraqChannelExtractor.h [code]
ItraqConstants.h [code]
ITRAQLabeler.h [code]
ItraqQuantifier.h [code]
KnownDevBugs.doxygen
KroenikFile.h [code]
LabeledEval.C
LabeledPairFinder.h [code]
LabelFreeLabeler.h [code]
LayerData.h [code]
LayerStatisticsDialog.h [code]
LCElutionPeak.h [code]
LCMS.h [code]
LCMSCData.h [code]
LevMarqFitter1D.h [code]
LibSVMEncoder.h [code]
LinearInterpolation.h [code]
LinearRegression.h [code]
LinearResampler.h [code]
LinearResamplerAlign.h [code]
ListEditor.h [code]
LmaGaussFitter1D.h [code]
LmaGaussModel.h [code]
LmaIsotopeFitter1D.h [code]
LmaIsotopeModel.h [code]
LocalLinearMap.h [code]
LogConfigHandler.h [code]
LogStream.h [code]
LowessSmoothing.h [code]
LPWrapper.h [code]
Macros.h [code]
Main.doxygen
Map.h [code]
MapAlignerBase.h [code]
MapAlignerIdentification.C
MapAlignerPoseClustering.C
MapAlignerSpectrum.C
MapAlignmentAlgorithm.h [code]
MapAlignmentAlgorithmIdentification.h [code]
MapAlignmentAlgorithmPoseClustering.h [code]
MapAlignmentAlgorithmSpectrumAlignment.h [code]
MapAlignmentEvaluation.C
MapAlignmentEvaluationAlgorithm.h [code]
MapAlignmentEvaluationAlgorithmPrecision.h [code]
MapAlignmentEvaluationAlgorithmRecall.h [code]
MapAlignmentTransformer.h [code]
MapNormalizer.C
MapRTTransformer.C
MapStatistics.C
MarkerMower.h [code]
MascotAdapter.C
MascotAdapterOnline.C
MascotGenericFile.h [code]
MascotInfile.h [code]
MascotRemoteQuery.h [code]
MascotXMLFile.h [code]
MascotXMLHandler.h [code]
MassAnalyzer.h [code]
MassAnalyzerVisualizer.h [code]
MassCalculator.C
MassDecomposer.h [code]
MassDecomposition.h [code]
MassDecompositionAlgorithm.h [code]
MassExplainer.h [code]
MassTrace.h [code]
MassTraceDetection.h [code]
MassTraceExtractor.C
MathFunctions.h [code]
Matrix.h [code]
MaxLikeliFitter1D.h [code]
MetaDataBrowser.h [code]
MetaInfo.h [code]
MetaInfoDescription.h [code]
MetaInfoDescriptionVisualizer.h [code]
MetaInfoInterface.h [code]
MetaInfoRegistry.h [code]
MetaInfoVisualizer.h [code]
MockObjects.h [code]
ModelDescription.h [code]
ModelFitter.h [code]
Modification.h [code]
ModificationDefinition.h [code]
ModificationDefinitionsSet.h [code]
ModificationsDB.h [code]
ModificationVisualizer.h [code]
ModifierRep.h [code]
Modules.doxygen
MorphologicalFilter.h [code]
MRMDecoy.h [code]
MRMFeature.h [code]
MRMFeatureAccessOpenMS.h [code]
MRMFeatureFinderScoring.h [code]
MRMFragmentSelection.h [code]
MRMMapper.C
MRMPairFinder.C
MRMRTNormalizer.h [code]
MRMScoring.h [code]
MRMTransitionGroup.h [code]
MRMTransitionGroupPicker.h [code]
MS1FeatureMerger.h [code]
MS2ConsensusSpectrum.h [code]
MS2Feature.h [code]
MS2File.h [code]
MS2Fragment.h [code]
MS2Info.h [code]
MSChromatogram.h [code]
MSExperiment.h [code]
MsInspectFile.h [code]
MSPeak.h [code]
MSPFile.h [code]
MSQuantifications.h [code]
MSSim.h [code]
MSSimulator.C
MSSpectrum.h [code]
MultiGradient.h [code]
MultiGradientSelector.h [code]
MyriMatchAdapter.C
MzDataFile.h [code]
MzDataHandler.h [code]
MzDataValidator.h [code]
MzIdentMLFile.h [code]
MzIdentMLHandler.h [code]
MzIdentMLValidator.h [code]
MzMLFile.h [code]
MzMLHandler.h [code]
MzMLValidator.h [code]
MzQuantMLFile.h [code]
MzQuantMLHandler.h [code]
MzQuantMLValidator.h [code]
MzTab.h [code]
MzTabExporter.C
MzTabFile.h [code]
MzXMLFile.h [code]
MzXMLHandler.h [code]
NeutralLossDiffFilter.h [code]
NeutralLossMarker.h [code]
NLargest.h [code]
NNLS.h [code]
NoiseFilterGaussian.C
NoiseFilterSGolay.C
NonNegativeLeastSquaresSolver.h [code]
Normalizer.h [code]
O18Labeler.h [code]
OfflinePrecursorIonSelection.h [code]
OMSSAAdapter.C
OMSSACSVFile.h [code]
OMSSAXMLFile.h [code]
OpenMS_Tutorial.doxygen
OpenMS_Tutorial_html.doxygen
OpenMSInfo.C
OpenSwathAnalyzer.C
OpenSwathChromatogramExtractor.C
OpenSwathConfidenceScoring.C
OpenSwathDecoyGenerator.C
OpenSwathDIAPreScoring.C
OpenSwathFeatureXMLToTSV.C
OpenSwathHelper.h [code]
OpenSwathMzMLFileCacher.C
OpenSwathRewriteToFeatureXML.C
OpenSwathRTNormalizer.C
OptimizePeakDeconvolution.h [code]
OptimizePick.h [code]
Param.h [code]
ParamEditor.h [code]
ParamXMLFile.h [code]
ParamXMLHandler.h [code]
ParentPeakMower.h [code]
Peak1D.h [code]
Peak2D.h [code]
PeakAlignment.h [code]
PeakFileOptions.h [code]
PeakIndex.h [code]
PeakIntensityPredictor.h [code]
PeakMarker.h [code]
PeakPickerCWT.h [code]
PeakPickerHiRes.C
PeakPickerHiRes.h [code]
PeakPickerSH.h [code]
PeakPickerWavelet.C
PeakShape.h [code]
PeakSpectrumCompareFunctor.h [code]
PeakTypeEstimator.h [code]
PeakWidthEstimator.h [code]
PepIterator.h [code]
PepNovoAdapter.C
PepNovoInfile.h [code]
PepNovoOutfile.h [code]
PeptideAndProteinQuant.h [code]
PeptideEvidence.h [code]
PeptideHit.h [code]
PeptideHitVisualizer.h [code]
PeptideIdentification.h [code]
PeptideIdentificationVisualizer.h [code]
PeptideIndexer.C
PepXMLFile.h [code]
PepXMLFileMascot.h [code]
PersistentObject.h [code]
PhosphoScoring.C
PILISCrossValidation.h [code]
PILISIdentification.C
PILISIdentification.h [code]
PILISModel.h [code]
PILISModelCV.C
PILISModelGenerator.h [code]
PILISModelTrainer.C
PILISNeutralLossModel.h [code]
PILISScoring.h [code]
PILISSpectraGenerator.C
PoseClusteringAffineSuperimposer.h [code]
PoseClusteringShiftSuperimposer.h [code]
PosteriorErrorProbabilityModel.h [code]
Precursor.h [code]
PrecursorIonSelection.h [code]
PrecursorIonSelectionPreprocessing.h [code]
PrecursorIonSelector.C
PrecursorMassCorrector.C
PrecursorVisualizer.h [code]
ProcessData.h [code]
Product.h [code]
ProductModel.h [code]
ProductVisualizer.h [code]
ProgressLogger.h [code]
ProteinHit.h [code]
ProteinHitVisualizer.h [code]
ProteinIdentification.h [code]
ProteinIdentificationVisualizer.h [code]
ProteinInference.C
ProteinInference.h [code]
ProteinQuantifier.C
ProteinResolver.C
ProteinResolver.h [code]
ProtonDistributionModel.h [code]
ProtXMLFile.h [code]
PSLPFormulation.h [code]
PSProteinInference.h [code]
PTModel.C
PTMXMLFile.h [code]
PTMXMLHandler.h [code]
PTPredict.C
QApplicationTOPP.C
QApplicationTOPP.h [code]
QCCalculator.C
QCEmbedder.C
QCExporter.C
QCMerger.C
QcMLFile.h [code]
QCShrinker.C
QTCluster.h [code]
QTClusterFinder.h [code]
QuantitativeExperimentalDesign.h [code]
QuickStart.doxygen
RangeManager.h [code]
RangeUtils.h [code]
RawData.h [code]
RawMSSignalSimulation.h [code]
RawTandemMSSignalSimulation.h [code]
ReactionMonitoringTransition.h [code]
RealMassDecomposer.h [code]
Resampler.C
Residue.h [code]
ResidueDB.h [code]
ResidueModification.h [code]
RichPeak1D.h [code]
RichPeak2D.h [code]
RNPxl.C
RNPxlXICFilter.C
ROCCurve.h [code]
RTEvaluation.C
RTModel.C
RTPredict.C
RTSimulation.h [code]
Sample.h [code]
SampleTreatment.h [code]
SampleVisualizer.h [code]
SaveImageDialog.h [code]
SavitzkyGolayFilter.h [code]
Scaler.h [code]
ScanWindow.h [code]
ScanWindowVisualizer.h [code]
Scoring.h [code]
SeedListGenerator.C
SeedListGenerator.h [code]
SemanticValidator.C
SemanticValidator.h [code]
SeqanIncludeWrapper.h [code]
SequenceCoverageCalculator.C
SequestAdapter.C
SequestInfile.h [code]
SequestOutfile.h [code]
SHFeature.h [code]
SignalToNoiseEstimator.h [code]
SignalToNoiseEstimatorMeanIterative.h [code]
SignalToNoiseEstimatorMedian.h [code]
SILACAnalyzer.C
SILACClustering.h [code]
SILACFilter.h [code]
SILACFiltering.h [code]
SILACLabeler.h [code]
SILACPattern.h [code]
SILACPoint.h [code]
SimpleExtender.h [code]
SimpleOpenMSSpectraAccessFactory.h [code]
SimplePairFinder.h [code]
SimpleSeeder.h [code]
SimTypes.h [code]
SingleLinkage.h [code]
SingletonRegistry.h [code]
Software.h [code]
SoftwareVisualizer.h [code]
SourceFile.h [code]
SourceFileVisualizer.h [code]
SparseVector.h [code]
SpecArrayFile.h [code]
SpecLibCreator.C
SpecLibSearcher.C
SpectraFilterBernNorm.C
SpectraFilterMarkerMower.C
SpectraFilterNLargest.C
SpectraFilterNormalizer.C
SpectraFilterParentPeakMower.C
SpectraFilterScaler.C
SpectraFilterSqrtMower.C
SpectraFilterThresholdMower.C
SpectraFilterWindowMower.C
SpectraIdentificationViewWidget.h [code]
SpectraMerger.C
SpectraMerger.h [code]
SpectraSTSimilarityScore.h [code]
SpectraViewWidget.h [code]
Spectrum1DCanvas.h [code]
Spectrum1DGoToDialog.h [code]
Spectrum1DPrefDialog.h [code]
Spectrum1DWidget.h [code]
Spectrum2DCanvas.h [code]
Spectrum2DGoToDialog.h [code]
Spectrum2DPrefDialog.h [code]
Spectrum2DWidget.h [code]
Spectrum3DCanvas.h [code]
Spectrum3DOpenGLCanvas.h [code]
Spectrum3DPrefDialog.h [code]
Spectrum3DWidget.h [code]
SpectrumAccessOpenMS.h [code]
SpectrumAccessOpenMSCached.h [code]
SpectrumAddition.h [code]
SpectrumAlignment.h [code]
SpectrumAlignmentDialog.h [code]
SpectrumAlignmentScore.h [code]
SpectrumCanvas.h [code]
SpectrumCheapDPCorr.h [code]
SpectrumHelpers.h [code]
SpectrumIdentification.h [code]
SpectrumPrecursorComparator.h [code]
SpectrumSettings.h [code]
SpectrumSettingsVisualizer.h [code]
SpectrumWidget.h [code]
SqrtMower.h [code]
StablePairFinder.h [code]
StandardTypes.h [code]
StatisticFunctions.h [code]
StatsHelpers.h [code]
SteinScottImproveScore.h [code]
StopWatch.h [code]
StreamHandler.h [code]
String.h [code]
StringList.h [code]
SuffixArray.h [code]
SuffixArrayPeptideFinder.h [code]
SuffixArraySeqan.h [code]
SuffixArrayTrypticCompressed.h [code]
SuffixArrayTrypticSeqan.h [code]
SuperHirnParameters.h [code]
SuperHirnUtil.h [code]
SvmTheoreticalSpectrumGenerator.h [code]
SvmTheoreticalSpectrumGeneratorSet.h [code]
SvmTheoreticalSpectrumGeneratorTrainer.C
SvmTheoreticalSpectrumGeneratorTrainer.h [code]
SVMWrapper.h [code]
SVOutStream.h [code]
Tagging.h [code]
TaggingVisualizer.h [code]
TargetedExperiment.h [code]
TargetedExperimentHelper.h [code]
TextExporter.C
TextFile.h [code]
TheoreticalSpectrumGenerationDialog.h [code]
TheoreticalSpectrumGenerator.h [code]
ThresholdMower.h [code]
TICFilter.h [code]
TMTAnalyzer.C
TOFCalibration.C
TOFCalibration.h [code]
ToolDescription.h [code]
ToolDescriptionFile.h [code]
ToolDescriptionHandler.h [code]
ToolHandler.h [code]
ToolsDialog.h [code]
TOPP.doxygen
TOPP_advanced.doxygen
TOPP_concepts.doxygen
TOPP_scripting.doxygen
TOPP_Tutorial_html.doxygen
TOPPAS.C
TOPP_tutorial/TOPPAS.doxygen
doxygen/public/TOPPAS.doxygen
TOPPASBase.C
TOPPASBase.h [code]
TOPPASEdge.h [code]
TOPPASInputFileDialog.h [code]
TOPPASInputFileListVertex.h [code]
TOPPASInputFilesDialog.h [code]
TOPPASIOMappingDialog.h [code]
TOPPASLogWindow.h [code]
TOPPASMergerVertex.h [code]
TOPPASOutputFileListVertex.h [code]
TOPPASOutputFilesDialog.h [code]
TOPPASResource.h [code]
TOPPASResources.h [code]
TOPPASScene.h [code]
TOPPASTabBar.h [code]
TOPPASToolConfigDialog.h [code]
TOPPASToolVertex.h [code]
TOPPASTreeView.h [code]
TOPPASVertex.h [code]
TOPPASVertexNameDialog.h [code]
TOPPASWidget.h [code]
TOPPBase.h [code]
TOPPView.C
TOPPView_calling_topp.doxygen
TOPPView_interface.doxygen
TOPPViewBase.C
TOPPViewBase.h [code]
TOPPViewBehaviorInterface.h [code]
TOPPViewIdentificationViewBehavior.h [code]
TOPPViewOpenDialog.h [code]
TOPPViewPrefDialog.h [code]
TOPPViewSpectraViewBehavior.h [code]
TraceFitter.h [code]
TraMLFile.h [code]
TraMLHandler.h [code]
TraMLValidator.h [code]
TransformationDescription.h [code]
TransformationEvaluation.C
TransformationModel.h [code]
TransformationXMLFile.h [code]
TransitionExperiment.h [code]
TransitionHelper.h [code]
Transitions.h [code]
TransitionTSVReader.h [code]
TrypticIterator.h [code]
TwoDOptimization.h [code]
Types.h [code]
UnaryComposeFunctionAdapter.h [code]
UnimodXMLFile.h [code]
UnimodXMLHandler.h [code]
UniqueIdGenerator.h [code]
UniqueIdIndexer.h [code]
UniqueIdInterface.h [code]
UTILS.doxygen
VersionInfo.h [code]
Weights.h [code]
WeightWrapper.h [code]
WindowMower.h [code]
XMassFile.h [code]
XMLFile.h [code]
XMLHandler.h [code]
XMLValidator.C
XMLValidator.h [code]
XTandemAdapter.C
XTandemInfile.h [code]
XTandemInfileXMLHandler.h [code]
XTandemXMLFile.h [code]
ZhangSimilarityScore.h [code]