Here is a list of all class members with links to the classes they belong to:

- i -

• i : Base64::Reinterpreter64_ , Base64::Reinterpreter32_ , IsotopeWavelet::fi_
• I_PEPTIDEMZ : LayerData
• ICP : IonSource
• ICPLLabeler() : ICPLLabeler
• id : SpectrumMeta , Compound , Peptide , LightPeptide , Contact , Publication , LightProtein , Instrument , ControlledVocabulary::CVTerm , Peptide , QcMLFile::QualityParameter
• ID : MS2Feature
• id : Protein
• ID : MS2Info
• id : ItraqConstants::ChannelInfo , ChromatogramMeta , CV , Protein
• id_ : PeptideEvidence , PeptideIdentification , ProteinIdentification , SpectrumIdentification , ResidueModification , Compomer , MzIdentMLHandler , IdXMLFile , DocumentIdentifier , Identification , IdentificationHit
• id_count : PeptideAndProteinQuant::PeptideData , PeptideAndProteinQuant::ProteinData
• id_data_ : MascotXMLHandler
• id_identifier_ : ConsensusXMLFile , FeatureXMLFile
• id_tag_support_ : TOPPBase
• id_tagger_ : TOPPBase
• IDDecoyProbability() : IDDecoyProbability
• Identification() : Identification
• identification_ : SpectrumSettings
• identification_date_ : ProteinIdentificationVisualizer
• IDENTIFICATION_MAPPING : DataProcessing
• identification_threshold_ : PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
• IdentificationHit() : IdentificationHit
• identificationview_behavior_ : TOPPViewBase
• identifier : ProteinResolver::ResolverResult , FASTAFile::FASTAEntry , MzTabSmallMoleculeSectionRow
• identifier_ : ProteinIdentificationVisualizer , CVMappingRule , CVReference , MascotXMLHandler , Acquisition , DocumentIdentifierVisualizer , PeptideIdentificationVisualizer
• identifier_id_ : ConsensusXMLFile , FeatureXMLFile
• identifyCharge() : IsotopeWaveletTransform< PeakType >
• IDEvaluationBase() : IDEvaluationBase
• IDFilter() : IDFilter
• IDINITIALUNTITLED : TOPPASBase
• IDMapper() : IDMapper
• IDRipper() : IDRipper
• idsToRemove : MS1FeatureMerger
• IDXML : FileTypes
• IdXMLFile() : IdXMLFile
• IEWindow() : InclusionExclusionList::IEWindow
• ifs_ : SpectrumAccessOpenMSCached
• ignore_charge_ : IDMapper , FeatureDistance
• ignore_update : SpectraIdentificationViewWidget
• ILLEGAL_PARAMETERS : TOPPBase
• IllegalArgument() : IllegalArgument
• IllegalKey() : Map< Key, T >::IllegalKey
• IllegalPosition() : IllegalPosition
• IllegalSelfOperation() : IllegalSelfOperation
• IllegalTreeOperation() : IllegalTreeOperation
• ILP_IPS : PrecursorIonSelection
• ILPDCWrapper() : ILPDCWrapper
• im : RawMSSignalSimulation::ContaminantInfo
• IM_ALL : RawMSSignalSimulation
• IM_ESI : RawMSSignalSimulation
• IM_LINEAR : MultiGradient
• IM_LOG : SpectrumCanvas
• IM_MALDI : RawMSSignalSimulation
• IM_NONE : SpectrumCanvas
• IM_PERCENTAGE : SpectrumCanvas
• IM_SNAP : SpectrumCanvas
• IM_STAIRS : MultiGradient
• IMD : Precursor
• importExperimentalSettings() : XMassFile
• IMSAlphabet() : IMSAlphabet
• IMSElement() : IMSElement
• IMSIsotopeDistribution() : IMSIsotopeDistribution
• in : TOPPViewBase
• in_description_ : FeatureXMLFile
• in_edges_ : TOPPASVertex
• in_ini_section_ : ToolDescriptionHandler
• in_spectrum_list_ : MzMLHandler< MapType >
• inc() : Histogram< ValueType, BinSizeType >
• inchi_key : MzTabSmallMoleculeSectionRow
• include() : TOPPASScene
• include_targets_ : TargetedExperiment
• IncludeExcludeTarget() : IncludeExcludeTarget
• includeMSMSPeptides_() : ProteinResolver
• includePipeline() : TOPPASBase
• InclusionExclusionList() : InclusionExclusionList
• incomingEdgesCount() : TOPPASVertex
• INCOMPATIBLE_INPUT_DATA : TOPPBase
• IncompatibleBinning() : BinnedSpectrumCompareFunctor::IncompatibleBinning
• IncompatibleIterators() : IncompatibleIterators
• incomplete_line_ : LogStreamBuf
• incorrectly_assigned_fit_param_ : PosteriorErrorProbabilityModel
• increase_LC_elution_peak_counter() : ProcessData
• increaseBoundingBox_() : IDMapper
• index : DeNovoIonScoring::IonScore , ChromatogramMeta , SpectrumMeta , ProteinResolver::ProteinEntry , ProteinResolver::PeptideEntry , ProteinResolver::MSDGroup , ProteinResolver::ISDGroup , SimpleExtender< PeakType, FeatureType >::IndexWithPriority , HashGrid< Cluster >::Iterator , HashGrid< Cluster >::ConstIterator , Matrix< Value >
• index2key() : LinearInterpolation< Key, Value >
• index2key_0() : BilinearInterpolation< Key, Value >
• index2key_1() : BilinearInterpolation< Key, Value >
• index_ : SparseVector< Value >::ValueProxy , SuffixArraySeqan , FidHandler , FeatureFinderDefs::NoSuccessor
• index_to_description_ : MetaInfoRegistry
• index_to_name_ : MetaInfoRegistry
• index_to_unit_ : MetaInfoRegistry
• index_to_value_ : MetaInfo
• indexed_schema_location_ : MzMLFile
• IndexOverflow() : IndexOverflow
• IndexPair : IsotopeCluster , FeatureFinderDefs
• indexPair() : Matrix< Value >
• IndexPosMappingType : PepNovoOutfile
• IndexSet : IsotopeCluster , FeatureFinderDefs , Fitter1D
• IndexSetIter : ModelFitter< PeakType, FeatureType >
• IndexTriple : OfflinePrecursorIonSelection
• IndexUnderflow() : IndexUnderflow
• IndexWithPriority() : SimpleExtender< PeakType, FeatureType >::IndexWithPriority
• indices_ : SuffixArrayTrypticCompressed , IsotopeWaveletTransform< PeakType > , SimpleSeeder< PeakType, FeatureType >
• indis : ProteinResolver::ProteinEntry
• indistinguishable_proteins_ : ProteinIdentification
• INDUCTIVEDETECTOR : IonDetector
• INDUCTIVELYCOUPLEDPLASMA : IonSource
• inEdgeHasChanged() : TOPPASOutputFileListVertex , TOPPASToolVertex , TOPPASVertex
• inEdgesBegin() : TOPPASVertex
• inEdgesEnd() : TOPPASVertex
• inf_ : SVOutStream
• infer() : ProteinInference
• infer_() : ProteinInference
• inferMoreEdges_() : FeatureDeconvolution
• infile_ : XTandemInfileXMLHandler
• infinity : FeatureDistance
• info_ : SpectrumCheapDPCorr , UniqueIdGenerator
• info_streams_ : LogConfigHandler
• infty_ : IntegerMassDecomposer< ValueType, DecompositionValueType >
• INFUSION : IonSource
• INI : FileTypes
• ini_file_ : ToolsDialog
• ini_location_ : TOPPBase
• INIFileEditorWindow() : INIFileEditorWindow
• InIntensityRange() : InIntensityRange< PeakType >
• init() : PILISModel , SignalToNoiseEstimator< Container > , IsotopeWavelet , BackgroundControl , IsotopicDist , ContinuousWaveletTransform , ContinuousWaveletTransformNumIntegration
• init_() : ItraqChannelExtractor , UniqueIdGenerator , MassExplainer , NLargest , MzDataHandler< MapType > , MzXMLHandler< MapType > , PeakPickerCWT
• init_param_ : GammaDistributionFitter , GaussFitter , GumbelDistributionFitter
• init_prob_ : HiddenMarkovModel
• init_size_ : DistanceMatrix< Value >
• initChannelMap() : ItraqConstants
• initialize_() : SimpleSeeder< PeakType, FeatureType >
• initialized_ : SimpleSeeder< PeakType, FeatureType >
• initializeDefaultParameters_() : TOPPViewBase
• initializedMaps_ : SvmTheoreticalSpectrumGenerator
• initializeGL() : Spectrum3DOpenGLCanvas
• initializeMap_() : FileTypes
• initializeMaps_() : SvmTheoreticalSpectrumGenerator
• initializeScan() : IsotopeWaveletTransform< PeakType >
• initializeWT_() : PeakPickerCWT
• initializeXCorrMatrix() : MRMScoring
• initialTrTolerance_ : SuperHirnParameters
• initIsotopeCorrections_() : ItraqQuantifier
• initIsotopeDist_ : SuperHirnParameters
• initIsotopeDistributions_() : CompNovoIdentificationBase , CompNovoIonScoringBase
• initParam_() : TOPPASToolVertex
• initParameters_() : SVMWrapper
• initParams() : FeatureFinderAlgorithmSHCtrl
• InitPlots() : PosteriorErrorProbabilityModel
• initStaticMembers_() : MzXMLHandler< MapType >
• initvec() : Chromatogram , Spectrum
• INIUpdater() : INIUpdater
• inlet_type_ : IonSource , IonSourceVisualizer
• INLETNULL : IonSource
• InletType : IonSource
• InMSLevelRange() : InMSLevelRange< SpectrumType >
• InMzRange() : InMzRange< PeakType >
• InPrecursorMZRange() : InPrecursorMZRange< SpectrumType >
• input_1_name_ : FuzzyStringComparator
• input_2_name_ : FuzzyStringComparator
• input_combo_ : ToolsDialog
• INPUT_FILE : ListEditor , ParameterInformation
• input_file_ : FastaIterator
• INPUT_FILE_CORRUPT : TOPPBase
• INPUT_FILE_EMPTY : TOPPBase
• INPUT_FILE_LIST : ParameterInformation
• INPUT_FILE_NOT_FOUND : TOPPBase
• INPUT_FILE_NOT_READABLE : TOPPBase
• input_filename_ : XTandemInfile
• input_line_1_ : FuzzyStringComparator
• input_line_2_ : FuzzyStringComparator
• input_type : ProteinResolver::ResolverResult
• inputFileReadable_() : TOPPBase
• InputLine() : FuzzyStringComparator::InputLine
• InRTRange() : InRTRange< SpectrumType >
• insert() : HashGrid< Cluster > , LogStream , ConstRefVector< ContainerT > , Param::ParamNode , Param , ConsensusFeature , MultiGradient
• insert_MZ_cluster_element() : ProcessData
• insert_new_observed_mz() : ProcessData
• insert_observed_mz() : ProcessData
• insertCluster_() : HierarchicalClustering< PointRef >
• insertHit() : PeptideIdentification , ProteinIdentification
• insertIndistinguishableProteins() : ProteinIdentification
• insertmarker() : MarkerMower
• insertNewVertex_() : TOPPASBase
• insertNewVertexInCenter_() : TOPPASBase
• insertNotification() : LogStream
• insertPair() : ROCCurve
• insertPoint() : HierarchicalClustering< PointRef >
• insertProteinGroup() : ProteinIdentification
• Inside : DRange< D >
• inside_ : LinearInterpolation< Key, Value >
• inside_0_ : BilinearInterpolation< Key, Value >
• inside_1_ : BilinearInterpolation< Key, Value >
• insideBand_() : MapAlignmentAlgorithmSpectrumAlignment
• InspectInfile() : InspectInfile
• InspectOutfile() : InspectOutfile
• instance() : SuperHirnParameters
• instance_ : LogConfigHandler , SuperHirnParameters , Factory< FactoryProduct > , SingletonRegistry
• instance_number_ : TOPPBase
• instance_ptr_ : Factory< FactoryProduct >
• institution_ : ContactPerson , ContactPersonVisualizer
• Instrument : TargetedExperiment , Instrument
• instrument_ : InspectInfile , MascotInfile , ExperimentalSettings , HPLC
• instrument_analyzer : MzTabUnitIdMetaData
• instrument_detector : MzTabUnitIdMetaData
• instrument_ref : Configuration
• instrument_settings_ : ChromatogramSettings , SpectrumSettings
• instrument_source : MzTabUnitIdMetaData
• instruments_ : TargetedExperiment , MzMLHandler< MapType >
• InstrumentSettings() : InstrumentSettings
• instrumentsettings_polarity_ : InstrumentSettingsVisualizer
• instrumentsettings_scan_mode_ : InstrumentSettingsVisualizer
• InstrumentSettingsVisualizer() : InstrumentSettingsVisualizer
• InstrumentVisualizer() : InstrumentVisualizer
• InsufficientInput() : ClusterFunctor::InsufficientInput
• INT : PILISCrossValidation::Option , ParameterInformation , ListEditor
• int_ : PrecursorVisualizer
• int_32_bit_ : PeakFileOptions
• int_field_ : CachedmzML
• INT_LIST : DataValue
• int_list_ : DataValue
• int_max : PILISCrossValidation::Option
• int_min : PILISCrossValidation::Option
• int_range_ : RangeManager< D >
• int_scale_ : Spectrum3DOpenGLCanvas
• int_stepsize : PILISCrossValidation::Option
• INT_VALUE : DataValue
• INTEGER : LPWrapper
• integer_data_arrays_ : MSChromatogram< PeakT > , MSSpectrum< PeakT >
• integer_decomposer_type : RealMassDecomposer
• integer_value_type : RealMassDecomposer
• IntegerDataArrays : MSChromatogram< PeakT > , MSSpectrum< PeakT >
• IntegerMassDecomposer() : IntegerMassDecomposer< ValueType, DecompositionValueType >
• integrate_() : GaussFilter , ContinuousWaveletTransformNumIntegration
• intens : FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >::BoxElement , cudaHelp , IsotopeWaveletTransform< PeakType >::BoxElement
• intens_signals : LCElutionPeak
• intensIsotopesStDev_ : ConsensusIsotopePattern
• intensities : SILACPoint
• INTENSITY : DataFilters , MSPeak
• intensity : ProteinResolver::PeptideEntry , ProteinResolver::MSDGroup , RawMSSignalSimulation::ContaminantInfo , FeatureFinderAlgorithmPickedHelperStructs::Seed , FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern , FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern , MS1Signal
• intensity_ : ChromatogramPeak , Peak1D , Peak2D , CentroidPeak
• intensity_bin_boarders : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
• intensity_bin_values : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
• intensity_bins_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• intensity_button_group_ : IDEvaluationBase , TOPPViewBase
• intensity_correlation_ : SILACFilter
• intensity_cutoff_ : SILACFilter , SILACFiltering
• intensity_mode_ : SpectrumCanvas
• intensity_mz_step_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• intensity_percentage_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• intensity_percentage_optional_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• intensity_range_ : FeatureFileOptions , PeakFileOptions
• intensity_rt_step_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• intensity_scale_ : RawMSSignalSimulation
• intensity_scale_stddev_ : RawMSSignalSimulation
• intensity_threshold_ : FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType > , SimpleExtender< PeakType, FeatureType >
• intensity_thresholds_ : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• intensity_type_ : FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >
• intensityArea : MS2Fragment
• IntensityBalanceFilter() : IntensityBalanceFilter
• intensityBinMap : BackgroundControl
• intensityCV_ : SuperHirnParameters
• intensityFilter_() : SILACFilter
• intensityFilterPassed_() : FeatureDeconvolution
• intensityFloor_ : SuperHirnParameters
• intensityHist_ : BackgroundIntensityBin
• IntensityIterator() : IntensityIterator< FeaFiModuleType >
• IntensityIteratorWrapper() : IntensityIteratorWrapper< IteratorT >
• IntensityLess() : IntensityLess< FeaFiModuleType >
• IntensityMap : SvmTheoreticalSpectrumGenerator
• intensityMap_ : BackgroundIntensityBin
• intensityModeChange_() : Spectrum1DCanvas , Spectrum2DCanvas , SpectrumCanvas , SpectrumWidget
• IntensityModes : SpectrumCanvas
• IntensityRangeType : RangeManager< D >
• intensityScore_() : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• intensityThreshold_ : SuperHirnParameters
• IntensityThresholdCalculation : SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container >
• IntensityType : InterpolationModel , ProductModel< 2 > , ChromatogramPeak , ProteinInference , MSExperiment< PeakT, ChromatogramPeakT > , Peak1D , Peak2D , BaseModel< D > , ExtendedIsotopeModel , FeaFiModule< PeakType, FeatureType > , FeatureFinderAlgorithm< PeakType, FeatureType > , IsotopeModel , LmaIsotopeModel , ModelFitter< PeakType, FeatureType > , SimpleExtender< PeakType, FeatureType > , Annotation1DItem
• intenstype_ : IsotopeWaveletTransform< PeakType >
• intercept_ : TransformationModelLinear , LinearRegression
• intermediate_products_ : ReactionMonitoringTransition
• Internal : Residue
• Internal::ClassTest::isFileSimilar : FuzzyStringComparator
• Internal::ClassTest::testStringSimilar : FuzzyStringComparator
• INTERNAL_ERROR : TOPPBase
• internal_formula_ : Residue
• InternalCalibration() : InternalCalibration
• interp_ : TransformationModelInterpolated
• interpol_xs_ : IsotopeWaveletTransform< PeakType >
• interpol_ys_ : IsotopeWaveletTransform< PeakType >
• interpolatedColorAt() : MultiGradient
• interpolation_ : InterpolationModel
• interpolation_mode_ : MultiGradient
• interpolation_step_ : Fitter1D , InterpolationModel
• interpolation_step_mz_ : ModelFitter< PeakType, FeatureType >
• interpolation_step_rt_ : ModelFitter< PeakType, FeatureType >
• InterpolationMode : MultiGradient
• InterpolationModel : GaussModel , InterpolationModel
• interpretation_list_ : IncludeExcludeTarget , TraMLProduct
• intersection_() : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• intersects() : DBoundingBox< D >
• Intersects : DRange< D >
• intersects() : DRange< D >
• IntList() : IntList
• INTLIST : ParameterInformation
• intlist : ParamXMLHandler
• ints_32 : MzMLHandler< MapType >::BinaryData
• ints_64 : MzMLHandler< MapType >::BinaryData
• inv_table_steps_ : IsotopeWavelet
• INVALID : UniqueIdInterface
• invalidate_() : HistogramWidget
• InvalidIterator() : InvalidIterator
• InvalidParameter() : InvalidParameter
• InvalidQuery() : DBConnection::InvalidQuery
• InvalidRange() : InvalidRange
• InvalidSize() : InvalidSize
• InvalidValue() : InvalidValue
• inventory_ : SingletonRegistry , Factory< FactoryProduct >
• invert() : TransformationDescription , TransformationModelLinear
• invertRecylingMode() : TOPPASToolVertex , TOPPASVertex
• IOException() : IOException
• IOInfo() : TOPPASToolVertex::IOInfo
• ion_cutoff_percentage_ : SequestInfile
• ion_detectors_ : Instrument
• ion_mass_tolerance_ : MascotInfile
• ion_optics_ : InstrumentVisualizer , Instrument
• ion_series_weights_ : SequestInfile
• ion_sources_ : Instrument
• ion_types : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
• IonDetector() : IonDetector
• IonDetectorVisualizer() : IonDetectorVisualizer
• ionization_method_ : IonSource , IonSourceVisualizer
• ionization_type_ : IonizationSimulation
• IONIZATIONMETHOD : RawMSSignalSimulation
• IonizationMethod : IonSource
• IonizationSimulation() : IonizationSimulation
• IonizationType : IonizationSimulation
• ionize() : IonizationSimulation
• ionizeEsi_() : IonizationSimulation
• ionizeMaldi_() : IonizationSimulation
• IONMETHODNULL : IonSource
• IonOpticsType : Instrument
• IonScore : CompNovoIdentification , CompNovoIdentificationBase , CompNovoIdentificationCID , CompNovoIonScoring , CompNovoIonScoringCID , CompNovoIonScoringBase::IonScore , DeNovoIonScoring::IonScore
• IonSeries : MRMDecoy
• IonSeriesMapType : MRMDecoy
• IonSource() : IonSource
• IonSourceVisualizer() : IonSourceVisualizer
• IONSTORAGE : MassAnalyzer
• IONTOPHOTONDETECTOR : IonDetector
• IonType : SvmTheoreticalSpectrumGeneratorTrainer , SvmTheoreticalSpectrumGenerator::IonType
• IOT_FILE : TOPPASToolVertex::IOInfo
• IOT_LIST : TOPPASToolVertex::IOInfo
• IOType : TOPPASToolVertex::IOInfo
• IPS : PrecursorIonSelection
• is_absdiff_small_ : FuzzyStringComparator
• is_active_ : ChargePair , DataFilters
• is_at_end_ : TrypticIterator , FastaIterator , EdwardsLippertIterator
• is_decoy_ : PeptideEvidence
• is_description_ : XTandemXMLFile
• is_end_ : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
• is_internal : ToolDescriptionInternal
• is_inverse_orientation_ : AxisWidget
• is_isotope_1_mono : CompNovoIonScoringBase::IonScore
• is_log_ : AxisWidget
• is_modified_ : Residue
• is_ms1_shown_ : SpectraIdentificationViewWidget
• is_number : FuzzyStringComparator::StreamElement_
• is_repeatable_ : CVMappingTerm
• is_result_valid_ : SignalToNoiseEstimator< Container >
• is_running_ : StopWatch
• is_space : FuzzyStringComparator::StreamElement_
• is_status_success_ : FuzzyStringComparator
• is_swapped_ : Spectrum1DCanvas
• isActive() : ChargePair , DataFilters
• isAtEnd() : EdwardsLippertIterator , PepIterator , TrypticIterator , FastaIteratorIntern , FastaIterator
• isCharged() : EmpiricalFormula
• isChildOf() : ControlledVocabulary
• isCompatible() : ModificationDefinitionsSet
• isConflicting() : Compomer
• isConnected() : DBConnection
• isConsensusFeatureVisible_() : Spectrum2DCanvas
• isContained() : BaseModel< D >
• isCutoffEnabled() : TOPPViewOpenDialog
• isd_group : ProteinResolver::ProteinEntry , ProteinResolver::PeptideEntry , ProteinResolver::MSDGroup
• isDigestingEnd() : TrypticIterator , EdwardsLippertIterator , EdwardsLippertIteratorTryptic , SuffixArraySeqan , SuffixArrayTrypticCompressed , SuffixArrayTrypticSeqan , SuffixArray
• isDirectory() : File
• isDryRun() : TOPPASScene
• isds : ProteinResolver::ResolverResult
• isEdgeAllowed_() : TOPPASScene
• isEditable() : BaseVisualizerGUI , MetaDataBrowser
• isEmpty() : DRange< D > , EmpiricalFormula , DataValue , DBoundingBox< D >
• IsEmptySpectrum() : IsEmptySpectrum< SpectrumType >
• isFeatureValid_() : IonizationSimulation
• isFinished() : TOPPASVertex
• isFixedModification() : ModificationDefinition
• isHidden() : HMMState
• isHigherScoreBetter() : PeptideIdentification , ProteinIdentification
• ISI : IonSource
• isIdentityCorrectionMatrix_() : ItraqQuantifier
• isInCache_() : LogStreamBuf
• isInitIsotopeDist() : SuperHirnParameters
• isInResidueSet() : Residue
• isInSpectrum_() : EdwardsLippertIterator
• isIntersected() : DRange< D >
• isLegalIsotopePattern2_() : FeatureFindingMetabo
• isLegalIsotopePattern_() : FeatureFindingMetabo
• isLegendShown() : AxisWidget , Spectrum3DCanvas , SpectrumWidget , Spectrum3DWidget
• isLogModelEnabled() : EnzymaticDigestion
• isLogScale() : AxisWidget
• isMatch_() : IDMapper
• isMetaEmpty() : MetaInfoInterface
• isModified() : AASequence , ParamEditor , Residue , AASequence
• isMzToXAxis() : SpectrumCanvas
• isNA() : MzTabModification , MzTabModificationList , MzTabDoubleList , MzTabString , MzTabParameter , MzTabStringList , MzTabSpectraRef , MzTabNAAbleBase , MzTabParameterList , MzTabNAAbleInterface
• iso_ : MassAnalyzerVisualizer
• iso_map_ : TwoDOptimization
• iso_map_iter : TwoDOptimization::Data
• iso_number_ms2_negative : ItraqQuantifier::ItraqQuantifierStats
• iso_number_reporter_different : ItraqQuantifier::ItraqQuantifierStats
• iso_number_reporter_negative : ItraqQuantifier::ItraqQuantifierStats
• iso_pattern_ : FeatureHypothesis
• iso_solution_different_intensity : ItraqQuantifier::ItraqQuantifierStats
• iso_stdev_first_ : ModelFitter< PeakType, FeatureType >
• iso_stdev_last_ : ModelFitter< PeakType, FeatureType >
• iso_stdev_stepsize_ : ModelFitter< PeakType, FeatureType >
• iso_total_intensity_negative : ItraqQuantifier::ItraqQuantifierStats
• isolation_width_ : MassAnalyzer
• ISOPEAKS : MSPeak
• isOpen() : Bzip2Ifstream , GzipIfstream
• isOpenMSDataPath_() : File
• isotope_corrections_ : ITRAQLabeler , ItraqQuantifier
• isotope_correlation : OpenSwath_Scores
• isotope_distance : LmaIsotopeFitter1D::Data
• isotope_distance_ : ExtendedIsotopeModel , LmaIsotopeFitter1D , SILACFilter , LmaIsotopeModel , IsotopeModel
• isotope_distribution_ : IsotopeModel , SILACFilter
• isotope_distributions_ : CompNovoIonScoringBase , IsotopeDistributionCache , FeatureFinderAlgorithmPicked< PeakType, FeatureType > , CompNovoIdentificationBase
• isotope_filt_svm_ : FeatureFindingMetabo
• isotope_lorentz_fwhm_ : IsotopeModel
• isotope_model_ : FeatureFindingMetabo
• isotope_overlap : OpenSwath_Scores
• isotope_stdev_ : LmaIsotopeFitter1D , IsotopeModel , LmaIsotopeModel , ExtendedIsotopeFitter1D , ExtendedIsotopeModel , IsotopeFitter1D , ModelFitter< PeakType, FeatureType >
• IsotopeCluster() : IsotopeCluster
• ISOTOPECORRECTIONS_EIGHTPLEX : ItraqConstants
• ISOTOPECORRECTIONS_FOURPLEX : ItraqConstants
• ISOTOPECORRECTIONS_TMT_SIXPLEX : ItraqConstants
• IsotopeDiffFilter() : IsotopeDiffFilter
• IsotopeDistribution() : IsotopeDistribution
• IsotopeDistributionCache() : IsotopeDistributionCache
• IsotopeFitter1D() : IsotopeFitter1D
• IsotopeMarker() : IsotopeMarker
• IsotopeMatrices : ITRAQLabeler , ItraqConstants , ItraqQuantifier
• IsotopeModel() : IsotopeModel
• isotopePattern : LCElutionPeak
• IsotopePattern() : FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern , FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• isotopes_ : IMSElement , Element
• isotopes_exact : LmaIsotopeFitter1D::Data
• isotopes_exact_ : LmaIsotopeFitter1D
• isotopes_per_peptide : SILACPoint
• isotopes_per_peptide_ : SILACFilter
• isotopes_stdev : LmaIsotopeFitter1D::Data
• isotopes_type : IMSElement
• isotopeScore_() : FeatureFinderAlgorithmPicked< PeakType, FeatureType >
• isotopesTrace_ : ConsensusIsotopePattern
• IsotopeType : CompNovoIdentification , CompNovoIdentificationCID , CompNovoIonScoring , CompNovoIonScoringCID , CompNovoIonScoringBase
• IsotopeVariant : Tagging
• IsotopeWavelet() : IsotopeWavelet
• IsotopeWaveletParallelFor() : IsotopeWaveletParallelFor< PeakType, FeatureType >
• IsotopeWaveletTransform() : IsotopeWaveletTransform< PeakType > , IsotopeWaveletTransform< PeakType >::TransSpectrum
• ISOTOPIC_LABEL : ResidueModification
• isotopicPeaks_ : DeconvPeak
• isotopIdx_ : CentroidPeak
• isPipelineRunning() : TOPPASScene
• isProteinInMinimalList() : PSProteinInference
• isReachable() : TOPPASVertex
• isRecyclingEnabled() : TOPPASVertex
• isRefining() : XTandemInfile
• isRegistered() : SingletonRegistry , Factory< FactoryProduct >
• isRTColumnOn() : RTSimulation
• isRunning() : StopWatch
• isSameHandle() : MapAlignmentEvaluationAlgorithm
• isSelected() : Annotation1DItem
• isSemanticallyValid() : TraMLFile , MzDataFile , MzIdentMLFile , MzQuantMLFile , MzMLFile
• isSILACPattern_() : SILACFilter
• isSILACPatternPicked_() : SILACFilter
• isSingleAdduct() : Compomer
• isSorted() : MSChromatogram< PeakT > , MSExperiment< PeakT, ChromatogramPeakT > , MSSpectrum< PeakT >
• isSupported() : FileHandler
• isTooFarFromCentroid_() : SimpleExtender< PeakType, FeatureType >
• isToolReady() : TOPPASToolVertex
• isTopoSortMarked() : TOPPASVertex
• isUpstreamFinished() : TOPPASVertex
• isValid() : XMLValidator , UniqueIdInterface , FeatureFinderAlgorithmPickedHelperStructs::MassTraces< PeakType > , Param::ParamEntry , AASequence , FeatureFinderAlgorithmPickedHelperStructs::MassTrace< PeakType > , MzMLFile , PeakIndex , Gradient , XMLFile
• IsZoomSpectrum() : IsZoomSpectrum< SpectrumType >
• IT : MassAnalyzer
• it_ : SuffixArraySeqan , FastaIteratorIntern , ConsensusXMLFile
• itemChanged() : TheoreticalSpectrumGenerationDialog
• itemClicked() : TOPPASScene
• itemDragged() : TOPPASVertex
• itemenclosed_ : CsvFile
• itemReleased() : TOPPASScene
• itemseperator_ : CsvFile
• ITERATION_EXCEEDED : NonNegativeLeastSquaresSolver
• iterator : ConstRefVector< ContainerT >
• Iterator : MSExperiment< PeakT, ChromatogramPeakT >
• iterator : DPosition< D, TCoordinateType >
• Iterator : Matrix< Value > , SparseVector< Value > , DPosition< D, TCoordinateType > , AASequence::Iterator , IsotopeDistribution , StringList
• iterator : HashGrid< Cluster >
• Iterator : Annotations1DContainer , FeatureMap< FeatureT > , HashGrid< Cluster >::Iterator , String
• iterator : Matrix< Value > , SparseVector< Value >
• Iterator() : AASequence::Iterator , HashGrid< Cluster >::Iterator , AASequence::Iterator
• iterator : MassTrace
• Iterator : MSSpectrum< PeakT >
• iterator : IMSAlphabet
• Iterator : ConstRefVector< ContainerT > , MSChromatogram< PeakT >
• iterator : IsotopeDistribution
• Iterator : Map< Key, T > , ConsensusMap
• iterator_category : AASequence::ConstIterator , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
• iteratorRange2Arrays_() : LinearRegression
• iteratorRange3Arrays_() : LinearRegression
• iteratorsSet() : PeakShape
• itraq_type_ : ItraqQuantifier , ItraqChannelExtractor , ITRAQLabeler
• ITRAQ_TYPES : ItraqConstants
• ItraqChannelExtractor() : ItraqChannelExtractor
• ITRAQLabeler() : ITRAQLabeler
• ItraqQuantifier() : ItraqQuantifier
• ItraqQuantifierStats() : ItraqQuantifier::ItraqQuantifierStats
• iwts_ : IsotopeWaveletParallelFor< PeakType, FeatureType >